RNA id: TU315065


Basic Information

Item Value
RNA id TU315065
length 591
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G265904
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8871114 ~ 8871704 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCACACAGAAGTGAGTGCAGTGTCGTGATCGAGAAGCTCGTTCGATAAAGTTGCTTCAGCGGTAGATTATCGAGGCTTAAGTCGAATAAAGGAAGAGAGCATTAAGTGAAAGTGTGGACAGTGACCCGCATTTCGTAGCGGAAAAGAGTTTTTCCCAGTTTTGTTCTCGTGGTATGTGTTGGCTGTTAGAATGACGAAGTAACACATTGTGAAGGCCACGGACACTGTGAGTACGCTCAAAGTGCAAACCTTGATTTTTGTCATCGAGAGACTCGTTACATGTctttttgctgcattttgcacTTCCCGTGTTTTGACTGAAAAGCATCGCTAAGAGCTAACATTTCAACGGGACTGTTCACGTGTGGTTGAGTTTCCCGCACGTGTCTGAGCGCGAGACCGCTGTGTGGTGCAATTAATACAGAGACGTAACTTTGAAGATTGTGTTGCTACCCTGCCATCCAAGTGACATCTCAGtttgattcatcttcagtttgaTCCTTTTTGAGATAGTTTATCTGTGGGATAGTTTTACAAAGTTGAGTGAATTTTTGAACTTGCACATTCCAACTACGTGATCTTCAGTTTA

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315043 lncRNA upstream 49431 8821476 ~ 8821683 (+) True G265884
XR_003402456.2 lncRNA upstream 177713 8691037 ~ 8693401 (+) True LOC113523760
TU314965 lncRNA upstream 181428 8687833 ~ 8689686 (+) True G265823
TU314951 lncRNA upstream 189543 8678126 ~ 8681571 (+) True G265810
TU314949 lncRNA upstream 202450 8667622 ~ 8668664 (+) True G265808
TU315067 lncRNA downstream 7497 8879201 ~ 8879421 (+) True G265906
TU315071 lncRNA downstream 8815 8880519 ~ 8881053 (+) True G265910
TU315089 lncRNA downstream 41275 8912979 ~ 8925501 (+) True G265928
TU315145 lncRNA downstream 100849 8972553 ~ 8973438 (+) True G265981
XR_004579790.1 lncRNA downstream 170650 9042354 ~ 9044626 (+) True LOC117599333
XM_026909772.2 mRNA upstream 139129 8715429 ~ 8731985 (+) True rnft1
XM_026944007.2 mRNA upstream 517273 8329705 ~ 8353841 (+) False LOC113544929
XM_034312463.1 mRNA upstream 653846 8200080 ~ 8217268 (+) True LOC117595648
XM_026943735.1 mRNA upstream 683504 8176891 ~ 8187610 (+) False tmem167a
XM_026943628.2 mRNA upstream 926986 7937883 ~ 7944128 (+) False cetn3
XM_026909767.2 mRNA downstream 200725 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_026927880.2 mRNA downstream 263456 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA downstream 263457 9135161 ~ 9151699 (+) False zdhhc20a
XM_026928171.2 mRNA downstream 345076 9216780 ~ 9252133 (+) True smyd4
XM_026927841.2 mRNA downstream 385239 9256943 ~ 9264111 (+) True LOC113534874
TU314948 other upstream 201317 8668814 ~ 8669797 (+) True G265807
TU314836 other upstream 231386 8633635 ~ 8639728 (+) True G265696
XR_003404564.2 other upstream 517273 8333490 ~ 8353841 (+) False LOC113544929
TU315389 other downstream 464097 9335801 ~ 9336290 (+) True G266161
XR_003404427.2 other downstream 547961 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other downstream 548764 9420468 ~ 9424855 (+) False LOC113543674
XR_004579824.1 other downstream 832656 9704360 ~ 9754590 (+) False dclk1a
TU316249 other downstream 1697324 10569028 ~ 10570705 (+) True G266868

Expression Profile