RNA id: TU315089


Basic Information

Item Value
RNA id TU315089
length 1609
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G265928
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8912979 ~ 8925501 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAAGACCAATGAGGACGATAAATTGGTGACTTCCTGTTTTCGAAttgttttgccgggagtttcttgcctgcatcGGCGTCttaaactatactgtttctttcttttttatcaataattttgcgctatcgttttcatctgttgtatttttcatgttatttttttttctctcgaagagcgcttttgtattttgtcacgacagcgagcggaggccatccacaccggatccacgccgtctaaaataatatcaacaaatcttcgactaagGAGCTGCGGGAGGATTGCCAAGGAAGtgtggtgctggagcagttACCAGAGGACGGAGGAGTCGCTGCCATCTAcctgaaaaggggaggagtcgCTGCCGTCCACCTGAAAGAAGAGGAGTAACTGTCTGCTGCCTGGAAAGGGGAGGAGCGGCTGCCATCCGCCAAAAAAAAGGAGAAGTGACTGCCATCCACCTGGGGACATAGGACCTGCTGCCATCCGCCAGAGGTGTGGCTGCCGTCCGCCTGAACAGGGGAGGAGCTGTAGCCACCACCAGGAGGTCCTGCGCCAGCGCCCGGTGTCGTGGGGATCGCTTCCCAGCTGGCAGAGGACCAGGGACCGGGGAACCAcgtttcttttctctctctctctctctctcttactgtctctgtTGCtcgctccttctctctcccctcttcctcctctcttcgGCAAAGgatgtattattttatgttattaggtaattgttttatgttatgtttgtaACTTTTACAATTAGACGTTACATTTAAGTTCACAGGCTTCCCATCTCCTCCTTCCCATCTCCTCCCCCATCCTTGAGATTTGTTACACCATGTTTTTACTCATGGAATACCACAGACTGTATTACCATACCAGGCCTTTTATTCTGTGGTAATCACTGAGGGACATTTGCATTGTACTAGTCTGTTCCTCCACACTGGTCCTGGTGCCACATGCCTTATAAGAATGAGTGGTTTCCAGGGTCTTTAAATGAAAGTTTGATTATTAGTGACATATTTCAGAGTGATCAGTTTATTGGTGTGTCTGTACAACTCAGCTGTGAGCGGAAAACTCTATGCATCATTCAAGAATGTGTACCTCACATCAATGGCTAAAAAGGGAGGCAGTTGGAAGGAAGTTGGCAAATGGATGAAGAGTGTTTTAGCATGTAGGGATTGGATAGATGAGAATGCCTTTAGTTTTTCACCATTTTTGCAAACAAAGCATGTTCCTAACTTTTAAACACCACAGATATAAGATCTggacaggatgtgtgtgtggcgtCTGATGCCTCAGCAGTAGAAACTGCCTGTTTAGACAGAATCCCAACCACGATATAGAACGTTTTCCTTTTCCTGGTGATTATGTCCCCCTTCTGTTTGAGTGTTTGAAAGAAGTAAGAAAGTTAGTTTAATCTGTGTATCCTCACATCCAATAGGATGTTGATTTCTTTgtgctttaataaatgaataagaataataacaaaatgaataattactgtgcaaaagtctttgacatatgcaaagaaatgctgtagagcaaagataccttgaaaaataatgaaactaaatgttactaaattaaaaaaatactgtaaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315071 lncRNA upstream 31926 8880519 ~ 8881053 (+) True G265910
TU315067 lncRNA upstream 33558 8879201 ~ 8879421 (+) True G265906
TU315065 lncRNA upstream 41275 8871114 ~ 8871704 (+) True G265904
TU315043 lncRNA upstream 91296 8821476 ~ 8821683 (+) True G265884
XR_003402456.2 lncRNA upstream 219578 8691037 ~ 8693401 (+) True LOC113523760
TU315145 lncRNA downstream 47052 8972553 ~ 8973438 (+) True G265981
XR_004579790.1 lncRNA downstream 116853 9042354 ~ 9044626 (+) True LOC117599333
TU315175 lncRNA downstream 129280 9054781 ~ 9054998 (+) True G266010
TU315190 lncRNA downstream 133894 9059395 ~ 9060691 (+) True G266017
XR_004579832.1 lncRNA downstream 137081 9062582 ~ 9065301 (+) True LOC117599365
XM_026909772.2 mRNA upstream 180994 8715429 ~ 8731985 (+) True rnft1
XM_026944007.2 mRNA upstream 559138 8329705 ~ 8353841 (+) False LOC113544929
XM_034312463.1 mRNA upstream 695711 8200080 ~ 8217268 (+) True LOC117595648
XM_026943735.1 mRNA upstream 725369 8176891 ~ 8187610 (+) False tmem167a
XM_026943628.2 mRNA upstream 968851 7937883 ~ 7944128 (+) False cetn3
XM_026909767.2 mRNA downstream 146928 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_026927880.2 mRNA downstream 209659 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA downstream 209660 9135161 ~ 9151699 (+) False zdhhc20a
XM_026928171.2 mRNA downstream 291279 9216780 ~ 9252133 (+) True smyd4
XM_026927841.2 mRNA downstream 331442 9256943 ~ 9264111 (+) True LOC113534874
TU314948 other upstream 243182 8668814 ~ 8669797 (+) True G265807
TU314836 other upstream 273251 8633635 ~ 8639728 (+) True G265696
XR_003404564.2 other upstream 559138 8333490 ~ 8353841 (+) False LOC113544929
TU315389 other downstream 410300 9335801 ~ 9336290 (+) True G266161
XR_003404427.2 other downstream 494164 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other downstream 494967 9420468 ~ 9424855 (+) False LOC113543674
XR_004579824.1 other downstream 778859 9704360 ~ 9754590 (+) False dclk1a
TU316249 other downstream 1643527 10569028 ~ 10570705 (+) True G266868

Expression Profile