RNA id: TU315175


Basic Information

Item Value
RNA id TU315175
length 218
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G266010
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 9054781 ~ 9054998 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtTCCAGTCTTGAAATTAGGGGCTGAACCTCTTCAGCAGAGAATGCTGGACTATATGTAGATGAAATGTTCTAGTACATCTGTAGAAAATTGAATGACCAATTACGATTTCAAAATTTGTGGTGatgaagcaaaacaaaatagacaaaaagaaaaaccaaaagatagaatgaacaaaagaaaaaccacACAGCTATTTGTTCATATTGAAACCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579790.1 lncRNA upstream 10155 9042354 ~ 9044626 (+) True LOC117599333
TU315145 lncRNA upstream 81343 8972553 ~ 8973438 (+) True G265981
TU315089 lncRNA upstream 129280 8912979 ~ 8925501 (+) True G265928
TU315071 lncRNA upstream 173728 8880519 ~ 8881053 (+) True G265910
TU315067 lncRNA upstream 175360 8879201 ~ 8879421 (+) True G265906
TU315190 lncRNA downstream 4397 9059395 ~ 9060691 (+) True G266017
XR_004579832.1 lncRNA downstream 7584 9062582 ~ 9065301 (+) True LOC117599365
TU315209 lncRNA downstream 103416 9158414 ~ 9159810 (+) True G266036
XR_003403580.2 lncRNA downstream 154833 9209831 ~ 9214419 (+) False LOC113535228
XR_004579818.1 lncRNA downstream 154840 9209838 ~ 9214419 (+) False LOC113535228
XM_026909772.2 mRNA upstream 322796 8715429 ~ 8731985 (+) True rnft1
XM_026944007.2 mRNA upstream 700940 8329705 ~ 8353841 (+) False LOC113544929
XM_034312463.1 mRNA upstream 837513 8200080 ~ 8217268 (+) True LOC117595648
XM_026943735.1 mRNA upstream 867171 8176891 ~ 8187610 (+) False tmem167a
XM_026943628.2 mRNA upstream 1110653 7937883 ~ 7944128 (+) False cetn3
XM_026909767.2 mRNA downstream 17431 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_026927880.2 mRNA downstream 80162 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA downstream 80163 9135161 ~ 9151699 (+) False zdhhc20a
XM_026928171.2 mRNA downstream 161782 9216780 ~ 9252133 (+) True smyd4
XM_026927841.2 mRNA downstream 201945 9256943 ~ 9264111 (+) True LOC113534874
TU314948 other upstream 384984 8668814 ~ 8669797 (+) True G265807
TU314836 other upstream 415053 8633635 ~ 8639728 (+) True G265696
XR_003404564.2 other upstream 700940 8333490 ~ 8353841 (+) False LOC113544929
TU315389 other downstream 280803 9335801 ~ 9336290 (+) True G266161
XR_003404427.2 other downstream 364667 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other downstream 365470 9420468 ~ 9424855 (+) False LOC113543674
XR_004579824.1 other downstream 649362 9704360 ~ 9754590 (+) False dclk1a
TU316249 other downstream 1514030 10569028 ~ 10570705 (+) True G266868

Expression Profile