RNA id: TU315209


Basic Information

Item Value
RNA id TU315209
length 1363
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G266036
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 9158414 ~ 9159810 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGTTAAAGGTGTGGATTGGCTGCCCATATATGATAAAGAAGAAACTATGTTCAAGAACACTGAGCCCACCAAACTGAAATATCAGGTCACATGAAACTTCCTCACGCTATTGTTGGTGCTGCAAAACTCCACATTCTAAGGCAAACCACACTGTTTTTGTGACAGAGGCAAAAGTCATGTtacatcatggaacatttttacaatacaactactaaaaaaacaaaagtcatCCACAACTATTTACATGGCAAAATTATCATAAGCCTGTGGCTATCAAGTTAAAACATACTCATAAATAGTGTAATTAGCTGAGCATTTACAGTTTATTGTGATTTACTGCCAAACATAAGATAATGTTTAAGTGTTAAATTTTTGGATTGGACTGTTttggttgtgtgtgtctgtggaaaaAACAAGCTTAAAgcaaagtgaagaaaaaaaaaaaaaaaaaaagagtcactAATGTCTTTAAGGCCTTGCAGGCTGCAGAACAGGAACAAAAGATGACAGAAACAAAACgtctcatgtctctctctgccctGAACCAATCACATCACCCCAAAGTGGATCTTAACAATGGCTGTCAGTGGAGGACCAAAGTGATTACATCCAGGAAGATTTCCACTGATGGGGTCTGGTTTTACAGATCTCTTTCCCACCCCTCCTAATTAGAGCTACTTAATGTTCAATATTGATAGCTTACACGTATACTCTAGCAATTTTTTGTCCCACACACTTGCTCTTGCTTgctcgctcactcactctcttgcgctctctctgtctctctctctctctcacacacacacacacacacacacacacattccctgtACCTTACATGCACAGGACCCTGGTCAGCTCAGTCTGTCTCACCATCTCAAACACTTTCCTGCTACTCTTTATGCATTGTTATTAAGAGGATAAAGAAACTCATCTCCGTGAAAATGAATTCATTCctcattctttgctttttttgttagTGACAAAAAAGCTTTGCTGATTTCCTCTCTCACAAACATACTCCCTCTTTCGCTGCCTCTGTGCCACATTCTTGCTCTCCACTCTGTTGCAGTGGAGGATGAGCATTGTTTTTACATCAGGAAGTCTGTACCCTTAGTTCAGCCCACTTTAGCCCAGCTCAGGAAGGCAGGGATGTCTCGAACTGGGACATTACGGGTTAGAGCTTTCACACGCAGATTACGGTCATCGGTTAGCAAAACCACTTCCCTGTGCAGGCGAACTGGCCCATCTGACagaaaatataatcatttttacacgtcaacacagaaaaaaaaatttcatacaCTTctctaaaacaaaacacaagcagAAAACACAGCAACATCCTTTCTGAAATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579832.1 lncRNA upstream 93113 9062582 ~ 9065301 (+) True LOC117599365
TU315190 lncRNA upstream 97723 9059395 ~ 9060691 (+) True G266017
TU315175 lncRNA upstream 103416 9054781 ~ 9054998 (+) True G266010
XR_004579790.1 lncRNA upstream 113788 9042354 ~ 9044626 (+) True LOC117599333
TU315145 lncRNA upstream 184976 8972553 ~ 8973438 (+) True G265981
XR_003403580.2 lncRNA downstream 50021 9209831 ~ 9214419 (+) False LOC113535228
XR_004579818.1 lncRNA downstream 50028 9209838 ~ 9214419 (+) False LOC113535228
TU315231 lncRNA downstream 50038 9209848 ~ 9214447 (+) False LOC113535228
XR_003403583.2 lncRNA downstream 50890 9210700 ~ 9214419 (+) True LOC113535228
XR_003403582.2 lncRNA downstream 50890 9210700 ~ 9214419 (+) False LOC113535228
XM_026927880.2 mRNA upstream 6715 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA upstream 6715 9135161 ~ 9151699 (+) False zdhhc20a
XM_026909767.2 mRNA upstream 82140 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_026909772.2 mRNA upstream 426429 8715429 ~ 8731985 (+) True rnft1
XM_026944007.2 mRNA upstream 804573 8329705 ~ 8353841 (+) False LOC113544929
XM_026928171.2 mRNA downstream 56970 9216780 ~ 9252133 (+) True smyd4
XM_026927841.2 mRNA downstream 97133 9256943 ~ 9264111 (+) True LOC113534874
XM_026941931.2 mRNA downstream 205537 9365347 ~ 9400306 (+) False uspl1
XM_034312843.1 mRNA downstream 205540 9365350 ~ 9400306 (+) False uspl1
XM_034312842.1 mRNA downstream 205552 9365362 ~ 9400306 (+) False uspl1
TU314948 other upstream 488617 8668814 ~ 8669797 (+) True G265807
TU314836 other upstream 518686 8633635 ~ 8639728 (+) True G265696
XR_003404564.2 other upstream 804573 8333490 ~ 8353841 (+) False LOC113544929
TU315389 other downstream 175991 9335801 ~ 9336290 (+) True G266161
XR_003404427.2 other downstream 259855 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other downstream 260658 9420468 ~ 9424855 (+) False LOC113543674
XR_004579824.1 other downstream 544550 9704360 ~ 9754590 (+) False dclk1a
TU316249 other downstream 1409218 10569028 ~ 10570705 (+) True G266868

Expression Profile