Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403582.2 |
| length | 682 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 3 |
| gene id | LOC113535228 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 9209831 ~ 9214447 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU315209 | lncRNA | upstream | 50890 | 9158414 ~ 9159810 (+) | True | G266036 |
| XR_004579832.1 | lncRNA | upstream | 145399 | 9062582 ~ 9065301 (+) | True | LOC117599365 |
| TU315190 | lncRNA | upstream | 150009 | 9059395 ~ 9060691 (+) | True | G266017 |
| TU315175 | lncRNA | upstream | 155702 | 9054781 ~ 9054998 (+) | True | G266010 |
| XR_004579790.1 | lncRNA | upstream | 166074 | 9042354 ~ 9044626 (+) | True | LOC117599333 |
| TU315359 | lncRNA | downstream | 42699 | 9257118 ~ 9264083 (+) | False | LOC113534874 |
| TU315390 | lncRNA | downstream | 122285 | 9336704 ~ 9337088 (+) | True | G266162 |
| TU315387 | lncRNA | downstream | 186869 | 9401288 ~ 9401816 (+) | True | G266160 |
| TU315388 | lncRNA | downstream | 186869 | 9401288 ~ 9401710 (+) | False | G266160 |
| TU315385 | lncRNA | downstream | 187512 | 9401931 ~ 9402718 (+) | True | G266159 |
| XM_026927880.2 | mRNA | upstream | 59001 | 9135160 ~ 9151699 (+) | True | zdhhc20a |
| XM_026927881.2 | mRNA | upstream | 59001 | 9135161 ~ 9151699 (+) | False | zdhhc20a |
| XM_026909767.2 | mRNA | upstream | 134426 | 9072429 ~ 9076274 (+) | True | si:ch211-244c8.4 |
| XM_026909772.2 | mRNA | upstream | 478715 | 8715429 ~ 8731985 (+) | True | rnft1 |
| XM_026944007.2 | mRNA | upstream | 856859 | 8329705 ~ 8353841 (+) | False | LOC113544929 |
| XM_026928171.2 | mRNA | downstream | 2361 | 9216780 ~ 9252133 (+) | True | smyd4 |
| XM_026927841.2 | mRNA | downstream | 42524 | 9256943 ~ 9264111 (+) | True | LOC113534874 |
| XM_026941931.2 | mRNA | downstream | 150928 | 9365347 ~ 9400306 (+) | False | uspl1 |
| XM_034312843.1 | mRNA | downstream | 150931 | 9365350 ~ 9400306 (+) | False | uspl1 |
| XM_034312842.1 | mRNA | downstream | 150943 | 9365362 ~ 9400306 (+) | False | uspl1 |
| TU314948 | other | upstream | 540903 | 8668814 ~ 8669797 (+) | True | G265807 |
| TU314836 | other | upstream | 570972 | 8633635 ~ 8639728 (+) | True | G265696 |
| XR_003404564.2 | other | upstream | 856859 | 8333490 ~ 8353841 (+) | False | LOC113544929 |
| TU315389 | other | downstream | 121382 | 9335801 ~ 9336290 (+) | True | G266161 |
| XR_003404427.2 | other | downstream | 205246 | 9419665 ~ 9424855 (+) | True | LOC113543674 |
| XR_004579762.1 | other | downstream | 206049 | 9420468 ~ 9424855 (+) | False | LOC113543674 |
| XR_004579824.1 | other | downstream | 489941 | 9704360 ~ 9754590 (+) | False | dclk1a |
| TU316249 | other | downstream | 1354609 | 10569028 ~ 10570705 (+) | True | G266868 |
