RNA id: TU315387


Basic Information

Item Value
RNA id TU315387
length 529
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G266160
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 9401288 ~ 9401816 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actgggatctcctgggattttcacatgcaacagtctctagagtttacacagaatggtgcaaaaaacactgagtgagcaacagttctgtgggtagaaacgccttgttgatgagagaggtcataaaaaatggccagattggttcgagctgccaggagggatatagtaactcatataatcactctttacaactgtggtgagcagaaaagcatctcaacatgcacaGAACATagaaccttgaagtggatgggctacaacagcagaacaacATATCAGGttgcactcctgtcagccaaaaaccgGACCCTGTGGCCACCATGGGCataggctcacccaaactggacagttgtagattaggaaaaaaaaaaaaaaaaaaaagtcacctggTCTgtccagtctggtcattctcctctgttctctctcatcagcaaggtgtttcagcctgaaGACCTTCTgctctggatgttttttgttttttgcacaattctgtcTTAACTCTAGAGacttagagtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315390 lncRNA upstream 64200 9336704 ~ 9337088 (+) True G266162
TU315359 lncRNA upstream 137205 9257118 ~ 9264083 (+) False LOC113534874
TU315231 lncRNA upstream 186841 9209848 ~ 9214447 (+) False LOC113535228
XR_004579818.1 lncRNA upstream 186869 9209838 ~ 9214419 (+) False LOC113535228
TU315385 lncRNA downstream 115 9401931 ~ 9402718 (+) True G266159
TU315412 lncRNA downstream 45189 9447005 ~ 9447268 (+) True G266184
TU315413 lncRNA downstream 46256 9448072 ~ 9448341 (+) True G266185
TU315494 lncRNA downstream 94422 9496238 ~ 9496886 (+) True G266260
TU315527 lncRNA downstream 129553 9531369 ~ 9531778 (+) True G266279
XM_026941931.2 mRNA upstream 982 9365347 ~ 9400306 (+) False uspl1
XM_034312843.1 mRNA upstream 982 9365350 ~ 9400306 (+) False uspl1
XM_034312842.1 mRNA upstream 982 9365362 ~ 9400306 (+) False uspl1
XM_026941932.2 mRNA upstream 982 9375745 ~ 9400306 (+) True uspl1
XM_026927841.2 mRNA upstream 137177 9256943 ~ 9264111 (+) True LOC113534874
XM_034312263.1 mRNA downstream 17849 9419665 ~ 9424855 (+) False LOC113543674
XM_034312262.1 mRNA downstream 18652 9420468 ~ 9424855 (+) False LOC113543674
XM_034312264.1 mRNA downstream 18652 9420468 ~ 9424855 (+) False LOC113543674
XM_026942076.2 mRNA downstream 32004 9433820 ~ 9441067 (+) False alox5ap
XM_026942075.2 mRNA downstream 32004 9433820 ~ 9441067 (+) True alox5ap
TU315389 other upstream 64998 9335801 ~ 9336290 (+) True G266161
TU314948 other upstream 731491 8668814 ~ 8669797 (+) True G265807
TU314836 other upstream 761560 8633635 ~ 8639728 (+) True G265696
XR_004579838.1 other upstream 1047447 8333618 ~ 8353841 (+) True LOC113544929
TU314760 other upstream 1047473 8333502 ~ 8353815 (+) False LOC113544929
XR_003404427.2 other downstream 17849 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other downstream 18652 9420468 ~ 9424855 (+) False LOC113543674
XR_004579824.1 other downstream 302544 9704360 ~ 9754590 (+) False dclk1a
TU316249 other downstream 1167212 10569028 ~ 10570705 (+) True G266868
XR_004579830.1 other downstream 3914122 13315938 ~ 13316216 (+) True LOC113543571

Expression Profile