RNA id: TU315691


Basic Information

Item Value
RNA id TU315691
length 1813
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G266416
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 9764641 ~ 9766495 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTTTTATTGTAAATAcgacaaaaagaaaacaattgtATTTTACAGTTATTGATCTTTATATATTGGCATGAATGAATTTTGAACATTTGAAGAGATGCCTCCTGTCAGTTTCTGCCTTATTCACATTGCTGCAAATGCATGAATCAGCAGATGGGGCTCGAGTTCATAAGTTAGATTAAAAtctctttccttcatttttcaCCAATAACTGTACCTCTCCTCtctacaaacaaaaaacaaaacaataaattataaacatatgcAATAATCAAGCCaccatggaaaaataaaagaacaaaaaaatgtacaaattgaATCAAATGTACAGTACTAACCAGTCACCTAATCCCAGACAGCTGTGCTCATTAACTACTGCACCTCCGTCTCAGTCATCTACACATCCACGGCCAATAACAAGGCAAAATCCGCAAACTCTTTGCATAATTTATTGTTCTTTTGTTGAGTTTTTCGTTATTATTTACACCTTTGCAAGGAAACAAGGTTATATTAGAATTCAGTATTACACTGTAGATCCAAAAATATTCTTCTTACTCTTAAGaggctgaggggaaaaaatgaaactgcTGCATATTGAAgtgtttacatattttaatactCATATAAACCAAGCTTTCCTCCTCAAAAGCTTTATGATTTCTATTTCTCTCCTAGCTACGAAGTTATGATATTGCTTACTGCGGTGGTACAACAGAATcgttacacatgtttttaatattgaACAGATACAATGAACATCGATGCACAAATCATACAACTGGTGGTTTCtaaccaaaaataaaaccattccGCTAATAAATTATGTTATTGGTGCAAAGTGCCAATACAAAATcttcaacatttatttttttatcataaataatcagaaaatgtgtgagagtgagagggttacattttatttttaacttagtgtttttttttttttattcttttctcctCTTACATGCCGGTCTGCCCACGCTGTCGAGTTATGTACATATATGACAAAACAATTACCAAATATACAAAGAGGAAAACGAAGCTCGTTTTCTGATAGGACATTAGCTCCAGGGTGTACCTGGCTGCTCTCATCTCAAGCCACCATCATCTCATCAAAAGCTCCAACATTCtattaataatacacaataatttaCATACAGCAAGTCATTAACGATTTTAAAGGTGGTGGAACCGCGAAACTGAGGGATGTAAGCTCCGCCCTTAGAGCAAAGACCTGTTTTATATTCACCAACATTctgctgtgtgtgcgtgcgtgtgtgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgagtgtatgtCAGCCCCGGTTCTCTAGCCCACCCACTAAAATGAGAGTAAAAGCAttctttgattttattatttggtGGTTTGTCTCTGAAGCCTCTGAGGTTATACTTTCTCGAATCCACAGCAGTTGTAGCTTCTGATCATGTTCACAGTTTGCAAACAAGAGGACTTTACACGACCTATTATCATATGCGGGGTGTGAAAAACAATCCTAAAGATTCTAGCTTACAACAACAAAGTCTTATGTTTGTAATCTTTTCACAAAGTCTGACGGACCAGGCTATTCCAGAACAGAGACGTGTTTGGTGTGTCCAGAAACCTCGAACAGGTCGTGAGTTAGTAGGAGTTCTCCCAGCTGAAGTTTGGCAGCAGCCTGCAGTTGGCCTTCTTGTTCCTCACACAtctgtgtgcgcgtgtgtcCACTCTCAGTATCTGTTCTGATGCTCATAGTGCCAGCGGTTGAAATCAATGTTGAATGCCACGATGCTGCCTGATGCCATGCCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315586 lncRNA upstream 175518 9588878 ~ 9589123 (+) True G266323
TU315524 lncRNA upstream 183813 9576587 ~ 9580828 (+) True G266277
TU315530 lncRNA upstream 225342 9539082 ~ 9539299 (+) True G266282
TU315527 lncRNA upstream 232863 9531369 ~ 9531778 (+) True G266279
TU315494 lncRNA upstream 267755 9496238 ~ 9496886 (+) True G266260
TU315775 lncRNA downstream 169494 9935989 ~ 9936213 (+) True G266495
TU315779 lncRNA downstream 170900 9937395 ~ 9940300 (+) True G266497
TU315777 lncRNA downstream 171101 9937596 ~ 9940300 (+) False G266497
TU315778 lncRNA downstream 171146 9937641 ~ 9940300 (+) False G266497
TU315784 lncRNA downstream 177618 9944113 ~ 9945579 (+) True G266499
XM_026941871.2 mRNA upstream 1944 9704360 ~ 9762697 (+) False dclk1a
XM_026941872.2 mRNA upstream 1944 9747639 ~ 9762697 (+) False dclk1a
XM_034312678.1 mRNA upstream 10145 9704360 ~ 9754496 (+) True dclk1a
XM_026941878.2 mRNA upstream 65323 9690378 ~ 9699318 (+) False ccdc169
XM_026941877.2 mRNA upstream 65323 9690381 ~ 9699318 (+) True ccdc169
XM_026941945.2 mRNA downstream 248312 10014807 ~ 10019753 (+) True rfc3
XM_026941963.2 mRNA downstream 272914 10039409 ~ 10041796 (+) True zar1l
XM_026941964.2 mRNA downstream 272914 10039409 ~ 10041619 (+) False zar1l
XM_026941714.2 mRNA downstream 466211 10232706 ~ 10241765 (+) True hunk
XM_034312729.1 mRNA downstream 489080 10255575 ~ 10268750 (+) True eva1c
XR_004579824.1 other upstream 10051 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 339786 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 339786 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 428351 9335801 ~ 9336290 (+) True G266161
TU314948 other upstream 1094844 8668814 ~ 8669797 (+) True G265807
TU316249 other downstream 802533 10569028 ~ 10570705 (+) True G266868
XR_004579830.1 other downstream 3549443 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 4995818 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 6858414 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 6858905 16625400 ~ 16625472 (+) True trnar-ccu_8

Expression Profile