RNA id: TU316249


Basic Information

Item Value
RNA id TU316249
length 1678
RNA type TUCP
GC content 0.40
exon number 1
gene id G266868
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 10569028 ~ 10570705 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGTTTTCACTTTAATACAGGAAggcagatatgaagcttgcagacTTGCAAGTAAAGCTTTTATACTTTTCAAATATATAGCACACTGTACTTCCTcaatttatattacaaataGGACACAGCACAATTCACCAACATTTTccatatttatgaaatattgaaGCAGTATGCTAACCAAATCATTAATTACTTGTTCTCTATTATAACGTACAATTGTGTAAAGGAAACATTATGATTacattgtttgtttattatactAAGAACCTTTCATTACGTATGACCCTGTTGTATGTGGGAACACACAGcaggaaataaataaacctgGATCAACACTCGACAATTAATCAGACGtttaatacatacagtactatTACTCCAAGTTCAGTTGTATGTGCATAAAATACATAACAAGTAATGATAATGAACACTGATGTCAAAAAGAGAAGACATAAAATATGGTACACTTcatgtaaacataaatatgtgtatgGCTCATTACACAAAGCTATGTAAACAACTCGCAGCAGACATTCAGTGTTTCTTACAGTTTGGTATTTGTGCACAATCAGCAGTTTCTCTCTACTAACATAATGTAACCACATTTTAAAGTGTATTCTGTTACTGATTATTGATCATGGAAACTGTAACTGGAAACCTAATGTAAATGACCATACAATTTTGGTGAGCTGATTTGATTCCtttacttttttcctctttatccttttcaattttctttttcttcttatcaATCCTATAACAGTTCCTATCTTCCTACTGGGCTTACCCTTAGAGtgtctgttttgtgttattCTAAATAAGTAACCCCATTTCATATCCCCAAAGTTTAATACAATTTGTCAATATTTAACAATtgtgatataaatgtaaattaatacgTAATCCTTGGTCCTTTGAAATCAAGATATACATCTTAAAAACCACAATAATTAGCATAACTTCTGAGCACGCAGTTGTGGCCAGTTCTGAAACAGTACTCGAAGAGCACAGTTAATCCAAACCACTCAGACAGATGTTTAGAATGCAGCTGGACAGACAGACCTGACGGACCTTCCACAGGACTGAATCTTTCTGAGGCACTTGTTAAATTGCAAATACAGAGCATTGTGACTCGTCCGAGATGGCCCACAATAATCAGGACTGAATCCTGCGGCTGTCACACCTCAGAGCCATCGCTGCCTTCAAAACCGCTCCTCAATATAACCGGCTGCATGCTGCCAGAGACTGTTGGTCCCTCCTTCGCTGATTTCTTTCTCACCTCCTTTTCTGGTCTCCTCTGTGAACGCAGCATTAGAAAAAGCACAGCTACGATGAGGCCGAAGAGCAGCAGCCCAATTGAGATCCCCGCTGCCAGCACTGCCTCTTCCTCAGTGCCACGTTTGGTCATTTCATGCTGTACCAGGCCTTCAGGAAGAACCTCACCAGCCTGCACTGCCTGCTGGCGCTCTAGAGCAATGTGCATGATGTTGGTGCCTCGATTGTTCTCAGCACTGATCATTTCAGCGATAGCAGGCACGTCTTGGTTAGAGCGCCTAGCACGAGTGTTGTGCGCCACGAAGGAATGGTACTCCACGCTTCTTTTGCCGATGCCACGGTTTGCATTGTCTCTGGAGCGCACAGTGTAAATGGTGTGGATGTACCACTCACGGCCTGCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316165 lncRNA upstream 21846 10546821 ~ 10547182 (+) True G266802
TU315885 lncRNA upstream 565667 10003146 ~ 10003361 (+) True G266580
TU315784 lncRNA upstream 623449 9944113 ~ 9945579 (+) True G266499
TU315779 lncRNA upstream 628728 9937395 ~ 9940300 (+) True G266497
TU315777 lncRNA upstream 628728 9937596 ~ 9940300 (+) False G266497
TU316250 lncRNA downstream 1186 10571891 ~ 10572147 (+) True G266869
TU316252 lncRNA downstream 10154 10580859 ~ 10581182 (+) True G266871
TU316276 lncRNA downstream 96113 10666818 ~ 10668314 (+) True G266892
TU316286 lncRNA downstream 161832 10732537 ~ 10734630 (+) True G266901
TU316342 lncRNA downstream 248821 10819526 ~ 10819739 (+) True G266946
XM_026941838.2 mRNA upstream 14777 10520018 ~ 10554251 (+) True trim3b
XM_026941837.2 mRNA upstream 14777 10526996 ~ 10554251 (+) False trim3b
XM_026941835.2 mRNA upstream 14777 10534557 ~ 10554251 (+) False trim3b
XM_026941839.2 mRNA upstream 14777 10534557 ~ 10554251 (+) False trim3b
XM_026941715.2 mRNA upstream 49812 10507226 ~ 10519216 (+) True fhdc3
XM_026941585.2 mRNA downstream 167597 10738302 ~ 10759716 (+) True trpc4a
XM_026941913.2 mRNA downstream 205597 10776302 ~ 10811764 (+) False postna
XM_026941912.2 mRNA downstream 205598 10776303 ~ 10811764 (+) True postna
XM_026941952.2 mRNA downstream 294907 10865612 ~ 10882024 (+) True scaf4a
XM_026942063.2 mRNA downstream 313571 10884276 ~ 10890564 (+) True sod1
XR_004579824.1 other upstream 814438 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 1144173 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 1144173 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 1232738 9335801 ~ 9336290 (+) True G266161
TU314948 other upstream 1899231 8668814 ~ 8669797 (+) True G265807
XR_004579830.1 other downstream 2745233 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 4191608 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 6054204 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 6054695 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 6054777 16625482 ~ 16625553 (+) True trnam-cau_36

Expression Profile