RNA id: TU316342


Basic Information

Item Value
RNA id TU316342
length 214
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G266946
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 10819526 ~ 10819739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggcagccttttttgctgcggcgcccatggagcagttgggggttcagtgccttgctctagggtctcacctcagtcatggtattgagggtgggagagagagcgctggtcattcactcccccacctacaatccctgccagacctgagagtcgaacccacgaccttcaggttcaccttcgggttacaagtctgagcctctaaccattaggccacgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316286 lncRNA upstream 84896 10732537 ~ 10734630 (+) True G266901
TU316276 lncRNA upstream 151212 10666818 ~ 10668314 (+) True G266892
TU316252 lncRNA upstream 238344 10580859 ~ 10581182 (+) True G266871
TU316250 lncRNA upstream 247379 10571891 ~ 10572147 (+) True G266869
TU316165 lncRNA upstream 272344 10546821 ~ 10547182 (+) True G266802
TU316348 lncRNA downstream 61368 10881107 ~ 10882265 (+) False scaf4a
TU316349 lncRNA downstream 61368 10881107 ~ 10882056 (+) False scaf4a
TU316475 lncRNA downstream 216259 11035998 ~ 11036230 (+) True G267051
TU316486 lncRNA downstream 222478 11042217 ~ 11042390 (+) True G267062
TU316497 lncRNA downstream 236873 11056612 ~ 11057021 (+) True G267070
XM_026941913.2 mRNA upstream 7762 10776302 ~ 10811764 (+) False postna
XM_026941912.2 mRNA upstream 7762 10776303 ~ 10811764 (+) True postna
XM_026941585.2 mRNA upstream 59810 10738302 ~ 10759716 (+) True trpc4a
XM_026941838.2 mRNA upstream 265275 10520018 ~ 10554251 (+) True trim3b
XM_026941837.2 mRNA upstream 265275 10526996 ~ 10554251 (+) False trim3b
XM_026941952.2 mRNA downstream 45873 10865612 ~ 10882024 (+) True scaf4a
XM_026942063.2 mRNA downstream 64537 10884276 ~ 10890564 (+) True sod1
XM_026941745.2 mRNA downstream 94963 10914702 ~ 10975096 (+) True tiam1a
XM_034312503.1 mRNA downstream 94963 10914702 ~ 10975096 (+) False tiam1a
XM_026941746.2 mRNA downstream 141617 10961356 ~ 10975096 (+) False tiam1a
TU316249 other upstream 248821 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 1064936 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 1394671 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 1394671 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 1483236 9335801 ~ 9336290 (+) True G266161
XR_004579830.1 other downstream 2496199 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 3942574 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 5805170 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 5805661 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 5805743 16625482 ~ 16625553 (+) True trnam-cau_36

Expression Profile