RNA id: TU316475


Basic Information

Item Value
RNA id TU316475
length 233
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G267051
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11035998 ~ 11036230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTGTTCACGCATATGCATGGGTTTCACCTAGGTTTCGTCCAGCTGCTGTAGAAAACAGGAACttcagacagatggagaaagcCATTCAAACAAGCAGATAAGAAATGCTCAAGGCCATTCAGAACTAGCCATATGTATCaaagccctgaggctcaggtgAATTCACTGAGAAAAGGCTTGAAGGAGTCTTCATTCCATAATAAAgattaactaaattaaaatatgtttgcC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316348 lncRNA upstream 153733 10881107 ~ 10882265 (+) False scaf4a
TU316349 lncRNA upstream 153942 10881107 ~ 10882056 (+) False scaf4a
TU316342 lncRNA upstream 216259 10819526 ~ 10819739 (+) True G266946
TU316286 lncRNA upstream 301368 10732537 ~ 10734630 (+) True G266901
TU316276 lncRNA upstream 367684 10666818 ~ 10668314 (+) True G266892
TU316486 lncRNA downstream 5987 11042217 ~ 11042390 (+) True G267062
TU316497 lncRNA downstream 20382 11056612 ~ 11057021 (+) True G267070
TU316518 lncRNA downstream 50018 11086248 ~ 11087863 (+) True G267090
TU316536 lncRNA downstream 75156 11111386 ~ 11111597 (+) True G267103
TU316726 lncRNA downstream 396429 11432659 ~ 11432862 (+) True G267257
XM_034312913.1 mRNA upstream 671 10978094 ~ 11035327 (+) True grik1a
XM_034312910.1 mRNA upstream 671 10978094 ~ 11035327 (+) False grik1a
XM_034312911.1 mRNA upstream 671 10978094 ~ 11035327 (+) False grik1a
XM_026941998.2 mRNA upstream 671 10978095 ~ 11035327 (+) False grik1a
XM_026941999.2 mRNA upstream 671 10978095 ~ 11035327 (+) False grik1a
XM_026942029.2 mRNA downstream 38425 11074655 ~ 11083609 (+) True cct8
XM_026942003.2 mRNA downstream 47799 11084029 ~ 11098340 (+) True tmem135
XM_026941969.2 mRNA downstream 111365 11147595 ~ 11151753 (+) True LOC113543610
XM_026941625.2 mRNA downstream 115845 11152075 ~ 11155690 (+) True kpna7
XM_034312809.1 mRNA downstream 130907 11167137 ~ 11219048 (+) True LOC113543473
TU316249 other upstream 465293 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 1281408 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 1611143 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 1611143 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 1699708 9335801 ~ 9336290 (+) True G266161
XR_004579830.1 other downstream 2279708 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 3726083 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 5588679 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 5589170 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 5589252 16625482 ~ 16625553 (+) True trnam-cau_36

Expression Profile