RNA id: TU316486


Basic Information

Item Value
RNA id TU316486
length 174
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G267062
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11042217 ~ 11042390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTTGCCAGACCTGCATTTATTACCAGAACAAATCTACTAACCTTTGACTATGACTGGTCATTACCAAGGTTATTAGTCAAGTGCTGCCATCTGCTGGTGAAATACTCGTTCCTTCCAACAAATACTGAGTAGTGGCTTACAATGAACATTAATGTAGAAATATGCCTGCACa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316475 lncRNA upstream 5987 11035998 ~ 11036230 (+) True G267051
TU316348 lncRNA upstream 159952 10881107 ~ 10882265 (+) False scaf4a
TU316349 lncRNA upstream 160161 10881107 ~ 10882056 (+) False scaf4a
TU316342 lncRNA upstream 222478 10819526 ~ 10819739 (+) True G266946
TU316286 lncRNA upstream 307587 10732537 ~ 10734630 (+) True G266901
TU316497 lncRNA downstream 14222 11056612 ~ 11057021 (+) True G267070
TU316518 lncRNA downstream 43858 11086248 ~ 11087863 (+) True G267090
TU316536 lncRNA downstream 68996 11111386 ~ 11111597 (+) True G267103
TU316726 lncRNA downstream 390269 11432659 ~ 11432862 (+) True G267257
TU316789 lncRNA downstream 581984 11624374 ~ 11627972 (+) True G267314
XM_034312913.1 mRNA upstream 6890 10978094 ~ 11035327 (+) True grik1a
XM_026942029.2 mRNA downstream 32265 11074655 ~ 11083609 (+) True cct8
XM_026942003.2 mRNA downstream 41639 11084029 ~ 11098340 (+) True tmem135
XM_026941969.2 mRNA downstream 105205 11147595 ~ 11151753 (+) True LOC113543610
XM_026941625.2 mRNA downstream 109685 11152075 ~ 11155690 (+) True kpna7
XM_034312809.1 mRNA downstream 124747 11167137 ~ 11219048 (+) True LOC113543473
TU316249 other upstream 471512 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 1287627 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 1617362 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 1617362 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 1705927 9335801 ~ 9336290 (+) True G266161
XR_004579830.1 other downstream 2273548 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 3719923 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 5582519 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 5583010 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 5583092 16625482 ~ 16625553 (+) True trnam-cau_36

Expression Profile