RNA id: TU316518


Basic Information

Item Value
RNA id TU316518
length 1524
lncRNA type intronic
GC content 0.35
exon number 2
gene id G267090
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11086248 ~ 11087863 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATCATCAGGCATCTGGATTTTTCCTGCCTTATGATGGTAAAAAATGAggcaagttaaaaaaaaaaagtgtgtccTACATATTCAGGGCCCCTTGTATAAAAGCTGCATACTCATAAATGTTTTGATTTATGAAATAGATTTGAGTATATACATGTCCTTATGCAAACTTTAGACCATAAGTACACCGGTTCGCTGGGTTTTGTCAGGTCAGTAACTGACCCCTAATGGGTAATTTGTAATATTACTAGTATCTTTCAATATCACAatgctcatatatatatatatatatatatagttccaGCCGGTTCTAGATTGTGTGCACTCTCATTGCTTTAAAGAGGTCACTGGAGAATGAATTTGCTTATGTCAATAGATAGCACTGTGCAAAATATCTGCGATGTGCAAATGTGCCTGACTAATCTTGTGCCAAAATGCCCAGTGATAAAATTTTGTAGTTGTGCCTGATGGCTGGCTTTGTTAGGCCTGTATACTGTCAGGGCAAATTAAATCAGTGAATTGTGGCcagctttctgtttgtttgtttaatcttattttattctGATTACCCATCTAGAAGAATGCAGAATATGTGCATTTTCAGTGAATAGTTTTTGCACACCGTATATTTTAACAttgaattgagaaatgttttttattaaatgtttataccaaagcatggttgaattcttgaatctgattggtcagaaggtgtgcattatttacagctcggacagtagttccggctgtgaCATGAACAATATGTTAATATAATGCGCTcgatctaatacattattgtttctatagtaacagctcttacacagggacttgtatggtggacgtaatataatataatataagactaataataaatagatttaaaaagcATCTTGTTTaccaaagtaaaatgtataatctttgatgtgatgaagtttttttcttaggacacatttatttaacatttacggaaggggAAGTCTCAGTGTAagagctttgtaacactcacagtgctttgcaaagtttcccagcaggaAAGTCTTAAGGACAGTGGAGTTTACTCTTTCccgtttctcagtaaaatgacaagctatgtttttttgagaaacagagagagctagagaacgactgtttatcgcagctataacgtAGGTGAGAACAGGGCCTAATTTGCTtctcggatgttccacaacattaaatctaactataaaatgttaaaatgtgacgtttcattcattaataaattaaaccttGTAATCGCTGGGAAATCgctgtggtagctcagtggaataacacactccagaccatgctgttGAAAATATCGtacgaaaataatccactccGGGGGCGAGTGGGAGGTGTAgcggtgtgcattattttcatcaGGTGTTATtactgtcatgtgttattccttacttattgaaCTGAGGAATGTTagaaattactttattttatgtgGTCCATTCtagatctaatctaatctgaaaaGGGCTTTTTGATGAAAAATCTTGATCACTCTAGTTAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316497 lncRNA upstream 29227 11056612 ~ 11057021 (+) True G267070
TU316486 lncRNA upstream 43858 11042217 ~ 11042390 (+) True G267062
TU316475 lncRNA upstream 50018 11035998 ~ 11036230 (+) True G267051
TU316348 lncRNA upstream 203983 10881107 ~ 10882265 (+) False scaf4a
TU316349 lncRNA upstream 204192 10881107 ~ 10882056 (+) False scaf4a
TU316536 lncRNA downstream 23523 11111386 ~ 11111597 (+) True G267103
TU316726 lncRNA downstream 344796 11432659 ~ 11432862 (+) True G267257
TU316789 lncRNA downstream 536511 11624374 ~ 11627972 (+) True G267314
TU316792 lncRNA downstream 562566 11650429 ~ 11652188 (+) True G267317
TU316842 lncRNA downstream 740706 11828569 ~ 11828818 (+) True G267362
XM_026942029.2 mRNA upstream 2639 11074655 ~ 11083609 (+) True cct8
XM_034312913.1 mRNA upstream 50921 10978094 ~ 11035327 (+) True grik1a
XM_026941969.2 mRNA downstream 59732 11147595 ~ 11151753 (+) True LOC113543610
XM_026941625.2 mRNA downstream 64212 11152075 ~ 11155690 (+) True kpna7
XM_034312809.1 mRNA downstream 79274 11167137 ~ 11219048 (+) True LOC113543473
XM_034312728.1 mRNA downstream 146696 11234559 ~ 11245766 (+) True mtnr1bb
XM_026942019.2 mRNA downstream 205834 11293697 ~ 11304416 (+) True si:ch1073-15f19.2
TU316249 other upstream 515543 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 1331658 9704360 ~ 9754590 (+) False dclk1a
XR_003404427.2 other upstream 1661393 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other upstream 1661393 9420468 ~ 9424855 (+) False LOC113543674
TU315389 other upstream 1749958 9335801 ~ 9336290 (+) True G266161
XR_004579830.1 other downstream 2228075 13315938 ~ 13316216 (+) True LOC113543571
XR_004579771.1 other downstream 3674450 14762313 ~ 14771073 (+) False vps36
trnam-cau_35 other downstream 5537046 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 5537537 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 5537619 16625482 ~ 16625553 (+) True trnam-cau_36

Expression Profile