RNA id: TU319853


Basic Information

Item Value
RNA id TU319853
length 427
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G269993
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15929442 ~ 15929868 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGAGACGACTGAGCTTTCTGTTTGGTAGGGTAGGTGTGCTAATTTATGCTAACACcttctttattttaagaaaagaggcaaagtgatgtgatgaagcaaagTGGGCAGATCAGGTAAGGAGGTCAGAGCGCTTTCAACGTGGTGTGGTGACAACAGTCTCTCTCTGAATGTCAGCAAAACCAAGGACATGACTGGATTGTGGATTACAGAGTCACACAGAGGGGGTCACATTCCTGCCCACATCAATGCGGCAGAGGTGGAGAGAGTTAAGGGCTCCAAGTTCCTTGGTGTCCACATCTCTGAGGATCTCTCCCGGGGTGTCCGGGCTTCTCcgcaaagggccagtgtgggtgcaggttttcattccagtcaagcaggagccacatctTATTCCACCTGTTTAAACAGTTGCTCTTgcctttcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319847 lncRNA upstream 107 15922061 ~ 15929335 (+) True G269989
TU319693 lncRNA upstream 442879 15432044 ~ 15486563 (+) True G269852
TU319452 lncRNA upstream 624568 15299894 ~ 15304874 (+) True G269642
TU319448 lncRNA upstream 631115 15296544 ~ 15298327 (+) True G269641
TU319854 lncRNA downstream 72 15929940 ~ 15930641 (+) True G269994
TU319861 lncRNA downstream 10637 15940505 ~ 15941293 (+) True G269997
TU319862 lncRNA downstream 11591 15941459 ~ 15941659 (+) True G269998
TU319866 lncRNA downstream 14768 15944636 ~ 15945856 (+) True G270002
TU319867 lncRNA downstream 24760 15954628 ~ 15954876 (+) True G270003
XM_026941627.2 mRNA upstream 9882 15914224 ~ 15919560 (+) True ubxn8
XM_034312563.1 mRNA upstream 175551 15550925 ~ 15753891 (+) False LOC113543513
XM_026941830.2 mRNA downstream 28690 15958558 ~ 15987780 (+) True wrn
XM_034312645.1 mRNA downstream 63640 15993508 ~ 16075236 (+) False nrg1
XM_034312644.1 mRNA downstream 63643 15993511 ~ 16075236 (+) False nrg1
XM_034312649.1 mRNA downstream 63643 15993511 ~ 16075236 (+) False nrg1
XM_034312650.1 mRNA downstream 63643 15993511 ~ 16075236 (+) False nrg1
XR_004579771.1 other upstream 1158369 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 2613226 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 5358737 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6174852 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 6504587 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 695041 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 695532 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 695614 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 696105 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 696187 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile