RNA id: TU320120


Basic Information

Item Value
RNA id TU320120
length 203
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G270229
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15988653 ~ 15988855 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAGAATGAGCAAGGAGGTATATAAAATAGCTGTGGAGTAATCTTGGCAATATACCCAAACATAGATTCATTTAACTAACTTTTAATATGGTTTATTGTGCACATGCTCAATTTTGCTGTTTTACACTTTACAAGTTTTCCATGCTGTGCATTGATCCAGCTCATTAGACAGCAGCTGATGATTGAAATGAATGCTTCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319876 lncRNA upstream 143 15988285 ~ 15988510 (+) True G270012
TU319867 lncRNA upstream 33777 15954628 ~ 15954876 (+) True G270003
TU319866 lncRNA upstream 42797 15944636 ~ 15945856 (+) True G270002
TU319862 lncRNA upstream 46994 15941459 ~ 15941659 (+) True G269998
TU319861 lncRNA upstream 47360 15940505 ~ 15941293 (+) True G269997
TU320136 lncRNA downstream 5998 15994853 ~ 15995055 (+) True G270236
TU320194 lncRNA downstream 121516 16110371 ~ 16138309 (+) True G270289
XR_004579834.1 lncRNA downstream 146454 16135309 ~ 16136866 (+) True LOC117599367
TU320253 lncRNA downstream 243310 16232165 ~ 16264813 (+) True G270341
TU320370 lncRNA downstream 305017 16293872 ~ 16294107 (+) True G270437
XM_026941830.2 mRNA upstream 873 15958558 ~ 15987780 (+) True wrn
XM_026941627.2 mRNA upstream 69093 15914224 ~ 15919560 (+) True ubxn8
XM_026941778.2 mRNA upstream 234762 15559726 ~ 15753891 (+) False LOC113543513
XM_034312645.1 mRNA downstream 4653 15993508 ~ 16075236 (+) False nrg1
XM_034312644.1 mRNA downstream 4656 15993511 ~ 16075236 (+) False nrg1
XM_034312649.1 mRNA downstream 4656 15993511 ~ 16075236 (+) False nrg1
XM_034312650.1 mRNA downstream 4656 15993511 ~ 16075236 (+) False nrg1
XM_034312646.1 mRNA downstream 4656 15993511 ~ 16075236 (+) False nrg1
XR_004579771.1 other upstream 1217580 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 2672437 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 5417948 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6234063 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 6563798 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 636054 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 636545 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 636627 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 637118 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 637200 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile