RNA id: TU320399


Basic Information

Item Value
RNA id TU320399
length 262
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G270449
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16328511 ~ 16328772 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaaaaaataacgaGAACTAACTTTTTACGTTTTTCGCTttcatgtttcacagatgttccacattacACTCACTGGCATATTGCTGAGATAGAGAAATAAAATTCTTCAGGACATGCTGGTATCGAAAATAACCAATAACAccctgttgattaattttcttataaTAGCATGCACTGTGATGTTTAATTCCTTACCTATAAGCCCAATTGGCTGGTCACTTgaatttaatatgtaaaaatcaATCCTCAATAAAGTTTACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320370 lncRNA upstream 34404 16293872 ~ 16294107 (+) True G270437
TU320253 lncRNA upstream 63698 16232165 ~ 16264813 (+) True G270341
TU320194 lncRNA upstream 190202 16110371 ~ 16138309 (+) True G270289
XR_004579834.1 lncRNA upstream 191645 16135309 ~ 16136866 (+) True LOC117599367
TU320136 lncRNA upstream 333456 15994853 ~ 15995055 (+) True G270236
TU320453 lncRNA downstream 22476 16351248 ~ 16351459 (+) True G270495
TU320479 lncRNA downstream 56258 16385030 ~ 16385932 (+) True G270520
TU320489 lncRNA downstream 181771 16510543 ~ 16510747 (+) True G270525
TU320506 lncRNA downstream 247591 16576363 ~ 16577240 (+) True G270536
TU320608 lncRNA downstream 297212 16625984 ~ 16626358 (+) True G270626
XM_026941921.2 mRNA upstream 18205 16299094 ~ 16310306 (+) False LOC113543581
XM_026941879.2 mRNA downstream 49621 16378393 ~ 16417773 (+) True map3k1
XM_026941880.2 mRNA downstream 61083 16389855 ~ 16417773 (+) False map3k1
XM_026942031.2 mRNA downstream 91268 16420040 ~ 16429223 (+) False hmgcs1
XM_026942033.2 mRNA downstream 92793 16421565 ~ 16429223 (+) True hmgcs1
XM_026942032.2 mRNA downstream 92793 16421565 ~ 16429223 (+) False hmgcs1
XR_004579771.1 other upstream 1557438 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 3012295 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 5757806 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6573921 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 6903656 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 296137 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 296628 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 296710 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 297201 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 297283 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile