RNA id: TU320479


Basic Information

Item Value
RNA id TU320479
length 830
lncRNA type intronic
GC content 0.43
exon number 2
gene id G270520
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16385030 ~ 16385932 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTCAAGCTGGTTTAGActcttagtgtttttttttaatgtcgtTGGCAGCACATACTGAATAATAGAATCCTAATTTATGTGTATTGAACCAAAAAAATCTGGGAATTGCCCTCAGTGTGCCATCTTGCCTGTAAATATAGCTGGTATTGGTGTGTAAAGATATTTGCCCTCATTCTGTCGAGTGGAGGTCTCATGAGATTTGGCCTATTTTGTCTAACCAGTCAAGGCCTCTTCACGGTCACCAGAAAGCGCCTGTTTAATGCCTGGGTTAGCTGAAACGCTCATGCCTGGATGATGGCAACAAAGGTCCGGATATTTCCATGCCCATTAGGCCCTGTGGGCCCGCACAGGGATCCTCCAACCTCCCCCCCGTTTCTGTTTAGTTAGCAGCAGGACGAGGCAAGCTAGAGATTACATgtgaaaagcaaacacacaggTCCCTGTTTAATACGGCCCAGATTACTAGTTAAAACAATATGTCTTGTGGAGGGGCCTTTGGTAGATGCCCTTAGCACATCCACATCCATGCACATGTGAGACTGACCCTggtctgaaaaaacaaacaaaaaaagccctGTGTGATCACACGTTCCAGTAATGCAGGGAGAAAAATAATCTGGATAAAGTAAATGCATAATTTGTAGAAGTGAACGAGGAAATGGCTTTGGTTCCGTCCATAGAAGTGTTTAGTTATAGTGTTGTCACTTTCAAAATCTGGGAGGTTACccataaaatacaCACCAAGTCTCCAGGTGACTCTTAAATGACCTTAAACTGCACAAAGAATTTCATCCTCAGCAAGAATGGCCATTAGGAGTATacaatatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579797.1 lncRNA upstream 20288 16327619 ~ 16364742 (+) True LOC117599337
TU320453 lncRNA upstream 33571 16351248 ~ 16351459 (+) True G270495
TU320399 lncRNA upstream 56258 16328511 ~ 16328772 (+) True G270449
TU320370 lncRNA upstream 90923 16293872 ~ 16294107 (+) True G270437
TU320253 lncRNA upstream 120217 16232165 ~ 16264813 (+) True G270341
TU320489 lncRNA downstream 124611 16510543 ~ 16510747 (+) True G270525
TU320506 lncRNA downstream 190431 16576363 ~ 16577240 (+) True G270536
TU320608 lncRNA downstream 240052 16625984 ~ 16626358 (+) True G270626
TU320717 lncRNA downstream 411913 16797845 ~ 16798435 (+) True G270716
TU320859 lncRNA downstream 675049 17060981 ~ 17078555 (+) True G270833
XM_026941921.2 mRNA upstream 74724 16299094 ~ 16310306 (+) False LOC113543581
XM_026941880.2 mRNA downstream 3923 16389855 ~ 16417773 (+) False map3k1
XM_026942031.2 mRNA downstream 34108 16420040 ~ 16429223 (+) False hmgcs1
XM_026942033.2 mRNA downstream 35633 16421565 ~ 16429223 (+) True hmgcs1
XM_026942032.2 mRNA downstream 35633 16421565 ~ 16429223 (+) False hmgcs1
XM_034312895.1 mRNA downstream 47642 16433574 ~ 16507636 (+) True tln1
XR_004579771.1 other upstream 1613957 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 3068814 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 5814325 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6630440 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 6960175 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 238977 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 239468 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 239550 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 240041 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 240123 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile