RNA id: TU320489


Basic Information

Item Value
RNA id TU320489
length 205
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G270525
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16510543 ~ 16510747 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAATCTTCACTTTAAAGTAGAACTTCAGTCAGAATTCTCATGTTACTAACAAGAAGTAAACACATAGACACCAGTTAGAATTATTCAAATGACATTATGCTGGCTGGTAGCTATCATTTGTGTTTATCCACTGCATGATGTCTGGTTGAGGTACACTGCTGGTTATGTTAAGCAGTTGGGTAAAGTAAGGGGATTCTATTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320479 lncRNA upstream 124611 16385030 ~ 16385932 (+) True G270520
XR_004579797.1 lncRNA upstream 145801 16327619 ~ 16364742 (+) True LOC117599337
TU320453 lncRNA upstream 159084 16351248 ~ 16351459 (+) True G270495
TU320399 lncRNA upstream 181771 16328511 ~ 16328772 (+) True G270449
TU320370 lncRNA upstream 216436 16293872 ~ 16294107 (+) True G270437
TU320506 lncRNA downstream 65616 16576363 ~ 16577240 (+) True G270536
TU320608 lncRNA downstream 115237 16625984 ~ 16626358 (+) True G270626
TU320717 lncRNA downstream 287098 16797845 ~ 16798435 (+) True G270716
TU320859 lncRNA downstream 550234 17060981 ~ 17078555 (+) True G270833
TU320884 lncRNA downstream 576648 17087395 ~ 17087922 (+) True G270856
XM_034312895.1 mRNA upstream 2907 16433574 ~ 16507636 (+) True tln1
XM_034312896.1 mRNA upstream 2907 16467800 ~ 16507636 (+) False tln1
XM_034312897.1 mRNA upstream 2907 16470943 ~ 16507636 (+) False tln1
XM_026942031.2 mRNA upstream 81320 16420040 ~ 16429223 (+) False hmgcs1
XM_026942033.2 mRNA upstream 81320 16421565 ~ 16429223 (+) True hmgcs1
XM_026941907.2 mRNA downstream 488 16511235 ~ 16530219 (+) False tpm2
XM_026941905.2 mRNA downstream 489 16511236 ~ 16534943 (+) False tpm2
XM_026941906.2 mRNA downstream 489 16511236 ~ 16530219 (+) False tpm2
XM_026941904.2 mRNA downstream 490 16511237 ~ 16534943 (+) False tpm2
XM_026941911.2 mRNA downstream 7483 16518230 ~ 16530219 (+) False tpm2
XR_004579771.1 other upstream 1739470 14762313 ~ 14771073 (+) False vps36
XR_004579830.1 other upstream 3194327 13315938 ~ 13316216 (+) True LOC113543571
TU316249 other upstream 5939838 10569028 ~ 10570705 (+) True G266868
XR_004579824.1 other upstream 6755953 9704360 ~ 9754590 (+) False dclk1a
XR_004579762.1 other upstream 7085688 9420468 ~ 9424855 (+) False LOC113543674
trnam-cau_35 other downstream 114162 16624909 ~ 16624980 (+) True trnam-cau_35
trnar-ccu_8 other downstream 114653 16625400 ~ 16625472 (+) True trnar-ccu_8
trnam-cau_36 other downstream 114735 16625482 ~ 16625553 (+) True trnam-cau_36
trnar-ccu_9 other downstream 115226 16625973 ~ 16626045 (+) True trnar-ccu_9
trnam-cau_37 other downstream 115308 16626055 ~ 16626126 (+) True trnam-cau_37

Expression Profile