Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU320506 |
| length | 277 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 2 |
| gene id | G270536 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 16576363 ~ 16577240 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU320489 | lncRNA | upstream | 65616 | 16510543 ~ 16510747 (+) | True | G270525 |
| TU320479 | lncRNA | upstream | 190431 | 16385030 ~ 16385932 (+) | True | G270520 |
| XR_004579797.1 | lncRNA | upstream | 211621 | 16327619 ~ 16364742 (+) | True | LOC117599337 |
| TU320453 | lncRNA | upstream | 224904 | 16351248 ~ 16351459 (+) | True | G270495 |
| TU320399 | lncRNA | upstream | 247591 | 16328511 ~ 16328772 (+) | True | G270449 |
| TU320608 | lncRNA | downstream | 48744 | 16625984 ~ 16626358 (+) | True | G270626 |
| TU320717 | lncRNA | downstream | 220605 | 16797845 ~ 16798435 (+) | True | G270716 |
| TU320859 | lncRNA | downstream | 483741 | 17060981 ~ 17078555 (+) | True | G270833 |
| TU320884 | lncRNA | downstream | 510155 | 17087395 ~ 17087922 (+) | True | G270856 |
| TU320889 | lncRNA | downstream | 521901 | 17099141 ~ 17101046 (+) | False | si:ch73-234b20.5 |
| XM_026941568.2 | mRNA | upstream | 23845 | 16538769 ~ 16552518 (+) | True | zgc:114200 |
| XM_026941905.2 | mRNA | upstream | 41420 | 16511236 ~ 16534943 (+) | False | tpm2 |
| XM_026941904.2 | mRNA | upstream | 41420 | 16511237 ~ 16534943 (+) | False | tpm2 |
| XM_026941909.2 | mRNA | upstream | 41420 | 16518234 ~ 16534943 (+) | True | tpm2 |
| XM_026941908.2 | mRNA | upstream | 41420 | 16518237 ~ 16534943 (+) | False | tpm2 |
| XM_026941609.2 | mRNA | downstream | 5796 | 16583036 ~ 16589994 (+) | True | reep5 |
| XM_026942067.2 | mRNA | downstream | 14653 | 16591893 ~ 16594397 (+) | True | LOC113543669 |
| XM_026941747.2 | mRNA | downstream | 93077 | 16670317 ~ 16744667 (+) | False | pam |
| XM_026941750.2 | mRNA | downstream | 93077 | 16670317 ~ 16744667 (+) | False | pam |
| XM_034312523.1 | mRNA | downstream | 93089 | 16670329 ~ 16744667 (+) | True | pam |
| XR_004579771.1 | other | upstream | 1805290 | 14762313 ~ 14771073 (+) | False | vps36 |
| XR_004579830.1 | other | upstream | 3260147 | 13315938 ~ 13316216 (+) | True | LOC113543571 |
| TU316249 | other | upstream | 6005658 | 10569028 ~ 10570705 (+) | True | G266868 |
| XR_004579824.1 | other | upstream | 6821773 | 9704360 ~ 9754590 (+) | False | dclk1a |
| XR_004579762.1 | other | upstream | 7151508 | 9420468 ~ 9424855 (+) | False | LOC113543674 |
| trnam-cau_35 | other | downstream | 47669 | 16624909 ~ 16624980 (+) | True | trnam-cau_35 |
| trnar-ccu_8 | other | downstream | 48160 | 16625400 ~ 16625472 (+) | True | trnar-ccu_8 |
| trnam-cau_36 | other | downstream | 48242 | 16625482 ~ 16625553 (+) | True | trnam-cau_36 |
| trnar-ccu_9 | other | downstream | 48733 | 16625973 ~ 16626045 (+) | True | trnar-ccu_9 |
| trnam-cau_37 | other | downstream | 48815 | 16626055 ~ 16626126 (+) | True | trnam-cau_37 |
