Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026942594.2 |
| length | 1184 |
| RNA type | mRNA |
| GC content | 0.37 |
| exon number | 3 |
| gene id | si:ch73-234b20.5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 17099096 ~ 17101069 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| K08513 | VAMP4; vesicle-associated membrane protein 4 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU320884 | lncRNA | upstream | 11174 | 17087395 ~ 17087922 (+) | True | G270856 |
| TU320859 | lncRNA | upstream | 20541 | 17060981 ~ 17078555 (+) | True | G270833 |
| TU320717 | lncRNA | upstream | 300661 | 16797845 ~ 16798435 (+) | True | G270716 |
| TU320608 | lncRNA | upstream | 472738 | 16625984 ~ 16626358 (+) | True | G270626 |
| TU320506 | lncRNA | upstream | 521856 | 16576363 ~ 16577240 (+) | True | G270536 |
| TU320899 | lncRNA | downstream | 26948 | 17128017 ~ 17138981 (+) | True | G270870 |
| TU320901 | lncRNA | downstream | 28623 | 17129692 ~ 17140573 (+) | True | G270872 |
| TU320902 | lncRNA | downstream | 35643 | 17136712 ~ 17149419 (+) | True | G270873 |
| TU320928 | lncRNA | downstream | 176587 | 17277656 ~ 17292883 (+) | True | G270893 |
| TU320948 | lncRNA | downstream | 260876 | 17361945 ~ 17388979 (+) | True | G270913 |
| XM_026942506.2 | mRNA | upstream | 206197 | 16828162 ~ 16892899 (+) | False | syk |
| XM_034312418.1 | mRNA | upstream | 206197 | 16860780 ~ 16892899 (+) | False | syk |
| XM_026942505.2 | mRNA | upstream | 206197 | 16868083 ~ 16892899 (+) | True | syk |
| XM_026942504.2 | mRNA | upstream | 206197 | 16868083 ~ 16892899 (+) | False | syk |
| XM_026942507.2 | mRNA | upstream | 206197 | 16868083 ~ 16892899 (+) | False | syk |
| XM_026942582.2 | mRNA | downstream | 12956 | 17114025 ~ 17123570 (+) | True | enoph1 |
| XM_026942595.2 | mRNA | downstream | 88886 | 17189955 ~ 17212123 (+) | True | snx30 |
| XM_026942846.2 | mRNA | downstream | 254030 | 17355099 ~ 17396817 (+) | True | plppr1 |
| XM_026942673.2 | mRNA | downstream | 451862 | 17552931 ~ 17609585 (+) | True | LOC113544058 |
| XM_034312655.1 | mRNA | downstream | 451862 | 17552931 ~ 17607000 (+) | False | LOC113544058 |
| trnam-cau_42 | other | upstream | 9718 | 17089307 ~ 17089378 (+) | True | trnam-cau_42 |
| trnar-ccu_13 | other | upstream | 9797 | 17089227 ~ 17089299 (+) | True | trnar-ccu_13 |
| trnam-cau_41 | other | upstream | 10496 | 17088529 ~ 17088600 (+) | True | trnam-cau_41 |
| trnar-ccu_12 | other | upstream | 10575 | 17088449 ~ 17088521 (+) | True | trnar-ccu_12 |
| trnam-cau_40 | other | upstream | 11277 | 17087748 ~ 17087819 (+) | True | trnam-cau_40 |
| TU321580 | other | downstream | 1303200 | 18404269 ~ 18407498 (+) | False | G271406 |
| TU321582 | other | downstream | 1303200 | 18404269 ~ 18407498 (+) | True | G271406 |
| trnam-cau_43 | other | downstream | 1358016 | 18459085 ~ 18459156 (+) | True | trnam-cau_43 |
| trnar-ccu_14 | other | downstream | 1358723 | 18459792 ~ 18459864 (+) | True | trnar-ccu_14 |
| trnar-ccu_15 | other | downstream | 1361163 | 18462232 ~ 18462304 (+) | True | trnar-ccu_15 |
