RNA id: TU320902


Basic Information

Item Value
RNA id TU320902
length 1532
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G270873
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 17136712 ~ 17149419 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaaaatattgcaaaaatacCTGCAAGAAAAAGTCGGTTTGCCAGGAATCTAAAAGTAACTTCATTCTTATAGCATGTTACAGACAAAATTAGTTACATGCATTGATGTACACAGAGCAAAAAGTTACACAGCCACACATTAATGCACTTATGGGCATCTACACATGAAAAACTCTTAGGTATGAAGGAAATCTATAATTTGCTACTCTATAAAATCCTTCATTTCAACTGATGTGAATGAATGCAAATCATTTCTACTCATGTGACACTTTTTGTAGTGTTCTATGCAATAGTAATCTAAAAATAGGCTATACATTATATAACCCAGGGCATTAATGTAACAAACATGTACaatccagattttaaaatgggaGACAATAAAATAGACATTTTCCATGCATTCCCACAAAATCTGTGTAAAATTTTCtataatatgtattttaatattagcAACAGGAGAAAATTGACAGTTGGTTTcacatcagttttttttctttttagtgatCTTCTGCCACATTATCTTGCACCTGATAGCTAATATTTGATAACATGAGCAGCAATCCTTCTAGCATGAATGTGTGCTCAAATAGTGCAAATTTACTCATTATGATTTGGATCAATTAGGCCTTGTGTTCATGAAAAGCATGAACAACTTGGACCATTAAAGTGCCTGTTTTTGGTAAAATTACAAAAAGCAGCAAATTTAAGGCAAAGCCTGTGCATGGATATCACTTTATAGGGTAATATTGGGCAAAGGTAAACATAGCATAAATTCACCCTACCTTAAGTGTGCTACAAAATATGTGGATGCATTGGATAATGCTTAAGTTACATGGATTGCCTAactaagaaaaaacaaacactattCACCAATAAATTCTGAAAGATATGCAAACAAAAAGattcacattaacattaacatctaCTCTCCTATGAAACAGCCAAAAATGTCAGCAGGTTCCAGCTAAATCTAAGCCATCACAATGGTTATCTTGTTTATAATTAACTGCTCTGTGACAGATtagaagtaaatgttttaaagaaagaaCACGACACTCCACTTTTACATTGCTGATATATAAGCGGTGCTGAGAGCTCTATGCTGCGTTTGGTTTTCAAGTGCTCCCATCACCTGTCCTTAGCTTCCGAGCCATGATCATCTCTGGCGTGGCTCTCTTCCGGTTGCTGGCGAGGCCGAGCCAGCACATGAGATCGATGAAGCACGTGGTGGGGTTGAAGCGAAAGCCAAATTCACTGGCTGCGTAGTCAAAAGGAAACGTGTGATGGAAGTTGTGGAAACCTTCCCCTAGTTCCAAAGGTGACAAAGCGGTTTTCTCGAGGGTTGATATTCTTGTTGTAGGGCCGGTTGCCGTACATATGTGCAGCGCTGTTGACTAACCAGGTGATATTGAGAGCAATGGTGTAGCGTAAGATAGAGGCCAGGAAGTATGAGTTCCACATGCTTTCACCCCAGAAGTACCATGGTACCAGAGTAGGCAGGAGGAAGCACATCACCAGCACTGAGATTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320889 lncRNA upstream 35666 17099141 ~ 17101046 (+) False si:ch73-234b20.5
TU320884 lncRNA upstream 48790 17087395 ~ 17087922 (+) True G270856
TU320859 lncRNA upstream 58157 17060981 ~ 17078555 (+) True G270833
TU320717 lncRNA upstream 338277 16797845 ~ 16798435 (+) True G270716
TU320608 lncRNA upstream 510354 16625984 ~ 16626358 (+) True G270626
TU320928 lncRNA downstream 128237 17277656 ~ 17292883 (+) True G270893
TU320948 lncRNA downstream 212526 17361945 ~ 17388979 (+) True G270913
TU321185 lncRNA downstream 540237 17689656 ~ 17690861 (+) True G271076
TU321215 lncRNA downstream 610131 17759550 ~ 17764529 (+) True G271102
TU321218 lncRNA downstream 620350 17769769 ~ 17773380 (+) True G271104
XM_026942582.2 mRNA upstream 13142 17114025 ~ 17123570 (+) True enoph1
XM_026942594.2 mRNA upstream 35643 17099096 ~ 17101069 (+) True si:ch73-234b20.5
XM_026942508.2 mRNA upstream 243813 16868084 ~ 16892899 (+) False syk
XM_026942595.2 mRNA downstream 40536 17189955 ~ 17212123 (+) True snx30
XM_026942846.2 mRNA downstream 205680 17355099 ~ 17396817 (+) True plppr1
XM_026942673.2 mRNA downstream 403512 17552931 ~ 17609585 (+) True LOC113544058
XM_034312655.1 mRNA downstream 403512 17552931 ~ 17607000 (+) False LOC113544058
XM_034312656.1 mRNA downstream 403512 17552931 ~ 17567593 (+) False LOC113544058
trnam-cau_42 other upstream 47334 17089307 ~ 17089378 (+) True trnam-cau_42
trnar-ccu_13 other upstream 47413 17089227 ~ 17089299 (+) True trnar-ccu_13
trnam-cau_41 other upstream 48112 17088529 ~ 17088600 (+) True trnam-cau_41
trnar-ccu_12 other upstream 48191 17088449 ~ 17088521 (+) True trnar-ccu_12
trnam-cau_40 other upstream 48893 17087748 ~ 17087819 (+) True trnam-cau_40
TU321580 other downstream 1254850 18404269 ~ 18407498 (+) False G271406
TU321582 other downstream 1254850 18404269 ~ 18407498 (+) True G271406
trnam-cau_43 other downstream 1309666 18459085 ~ 18459156 (+) True trnam-cau_43
trnar-ccu_14 other downstream 1310373 18459792 ~ 18459864 (+) True trnar-ccu_14
trnar-ccu_15 other downstream 1312813 18462232 ~ 18462304 (+) True trnar-ccu_15

Expression Profile