RNA id: TU321582


Basic Information

Item Value
RNA id TU321582
length 2513
RNA type TUCP
GC content 0.37
exon number 3
gene id G271406
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18404269 ~ 18407498 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATAACTCGACGCTGGAACAGGGTGGGGTAACGTTGCACTTACCCTGTTCGCACTTATTCCCGGATATTCAACAATTTGCTTGTTCTTTAAAACTCATACCTGGATGttattggagaaaaaaaaagtaaaaacttttTTAGAGAACTGCACAATGCCTGTCATTGCTAACAACCCGCTGGATGATGACGTTCTGACAGACGCTCTGAGACAGAACTTGTTGACATGCAGGCTTCAGCGCTGTAATAACCTCGGTGATTGCGTGATTCGGAACGGATTGAAGGTTTGTAAATGTATGCTGGGCTACAGAGGAGACGCATGCCAAGAAACGGTCAATGATGGATTAGCCGTCCCACTCACTCTGGGCGTCTTGGGCTTCATCATTGGCTTCATTATCCTGGCATTTGCTCTAGCATTTTTCCAGCAAAAGAGGAGGGAACGTTCATGGGAGAAAACCAATGAGAAAAGGGAGGCCTTGAAAAAGAATGGAAATTTTTCTCCCACAAAAATAGGTTTGTGACAGCTTCAGTGCAACACGAGATAAGACATCAATAAaaggtatttttaattttcttggCATGATGTCTGTAACAAACTGTTTTCATCTCCTCTTTGATAAAACATGCATCTGGACAGATAGGAGTGAACAGAATGAGTGAATCTTCAGCTTTCTTTTCCTAGGTTTCTTTTCCTACAAGCCTAGATGTTGGAATCACACATGGACATTCCCTTATATTATTGGCTTATGAATATGCCAGTGTATTCTGGATAATATGTCAATTCTGGATAATATGTCAATATCCTTTTTCTTTGACTTCTCCCCATTATAATTGGCATTAAAGACAGTAGGAGATCCTTCCCATCTGGAGAGCAGGGCGAAttatgctctcttggactcaGCCATAGATGGCTTTGGAATTGCTGGGCTCGAACTCACAATTTCTTGATGATAGGGCGAACGCTTAGATGCTCCTGTGGTGTTGCAGGGCTAGACAGTGTGATGATATTCTATCAATACCTTGATAAATTGTCACAATACAATTTTATGAGATATcatgatatgtttttttataaatatttttaaataccaaTTACAATCAATGGAAACAGTTGATCTGATGTTAAATTTATGTTCAGAATCTtggaaaagtttttatttattttattttcttcattgttaaatgctttatttttgtagacattaaataaaagtatcatcacactcatttttttaaggtttattttaaaatatatatatatatattgtgtattgtagaaatgtcttcaagctTCATGATGTTTGTCATTTCACCCACCCCTAATGTCCCCTAACATTTGTAGAGTCTGTCAAATTCCATTTAATCAGCTTATGGAAAACAAAGTGATATGGCTTGTAGCATGTAAATATTTGAGTGACTTTTCCCAAAGCATTCACCACTTTGGGACTAAGCACATATCTCGAAGGGTTTTGTATGTATTTCCAGTAAGGCCAGTGTAGCAATGGTCAAAAATTCTTTCCAATCGGCAACATCTTTTAAAATCAGACCACCTATAAGTACTTTGAAAAAAGGGAAGGGTGTGGATTTTAATCTGGCATTTTCCTGAAAGCCACCCACGCTGCTTATTTAGACACAAATAAAGTCTTCAAATAGCACCTATAAAAGATGGAATTATCAGTTTAACCCCCATGTAAAACGCATGGCACTGAATAGGccatatgatgtatgatgtagtCTTTGTGTACTTTGTGTAGTAAGCAAGTTTTAGTAAGTGCTTactctctgatctctctgtgtttttgtcaCCACAGGAAAAAGGGAGTTTTTGTATGTATAAAGTATTTCCACTTCGACAAAAATGAATACTTCTCTGCATTGTTTGCTTGGAATCAAAAGCCTTAAAAGTTTGGGCACTTTTATACTTCATGCAAATTCCACGTTTCTACTTTTAAAGGAAGGAGACAACAGGTGGCTTGTGCTTGGGTGCTCCTTGAACGCTCAAAGGCTCCAGTTGATAAATGCTAATGActgatattttgtgtgtgtctacCCATTTTACCCAAtgtttttctcagtgttttttcCTCGATGTTTTTTCTCAAtgcaaaagcattttaaatgcCATGTGTTGGACACATGATATGTCACTGATACTGGTAGTCTCATCTCACTCTCAATCTTGTGGCATTGAAGCAATGACTGCACTATCCTAGACACATAAAATGTCAAGTATTTCAGTAATGTGTTGTGCTTGTCTTTATATAGCTTCGTGTCTGACTGGTCAGTTCAAACCATGCCACATTTAGATTGGCGTATAGAATTATGTGCTCTGTATTGGGTGGTTTTAGGCAGCTCTTGTATATTTGAGACAGATTAAGACATTTCAGTGCACTTGAGCCTTGtgaccaaagaaaaaaaaaatcccactagAATTAGATGGTCCACTGTGTTCACATTTGATGATTTATCTTCTGCACTTATATGGTCAAAATCTGGCCATGAAAAACGTTGATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321496 lncRNA upstream 55885 18298122 ~ 18348384 (+) True G271340
TU321384 lncRNA upstream 278477 18125611 ~ 18125792 (+) False G271235
TU321386 lncRNA upstream 278593 18124822 ~ 18125676 (+) True G271235
TU321218 lncRNA upstream 630889 17769769 ~ 17773380 (+) True G271104
TU321215 lncRNA upstream 639740 17759550 ~ 17764529 (+) True G271102
XR_004579801.1 lncRNA downstream 18574 18426072 ~ 18427190 (+) True LOC117599343
TU321758 lncRNA downstream 505759 18913257 ~ 18913627 (+) True G271542
TU321760 lncRNA downstream 510511 18918009 ~ 18918576 (+) True G271544
TU321761 lncRNA downstream 511096 18918594 ~ 18919467 (+) True G271545
TU321764 lncRNA downstream 515866 18923364 ~ 18923583 (+) True G271548
XM_034312557.1 mRNA upstream 6232 18372712 ~ 18398037 (+) True si:dkey-88l16.3
XM_026942575.2 mRNA downstream 7089 18414587 ~ 18420080 (+) True parm1
XM_026942623.2 mRNA downstream 64035 18471533 ~ 18486927 (+) False sh3bp2
XM_026942622.2 mRNA downstream 66219 18473717 ~ 18486927 (+) False sh3bp2
XM_026942621.2 mRNA downstream 70858 18478356 ~ 18486927 (+) True sh3bp2
XM_026942620.2 mRNA downstream 70861 18478359 ~ 18486927 (+) False sh3bp2
trnam-cau_42 other upstream 1314891 17089307 ~ 17089378 (+) True trnam-cau_42
trnar-ccu_13 other upstream 1314970 17089227 ~ 17089299 (+) True trnar-ccu_13
trnam-cau_41 other upstream 1315669 17088529 ~ 17088600 (+) True trnam-cau_41
trnar-ccu_12 other upstream 1315748 17088449 ~ 17088521 (+) True trnar-ccu_12
trnam-cau_40 other upstream 1316450 17087748 ~ 17087819 (+) True trnam-cau_40
trnam-cau_43 other downstream 51587 18459085 ~ 18459156 (+) True trnam-cau_43
trnar-ccu_14 other downstream 52294 18459792 ~ 18459864 (+) True trnar-ccu_14
trnar-ccu_15 other downstream 54734 18462232 ~ 18462304 (+) True trnar-ccu_15
trnam-cau_44 other downstream 54816 18462314 ~ 18462385 (+) True trnam-cau_44
trnar-ccu_16 other downstream 55541 18463039 ~ 18463111 (+) True trnar-ccu_16

Expression Profile