RNA id: TU321761


Basic Information

Item Value
RNA id TU321761
length 874
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G271545
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18918594 ~ 18919467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cccacccaatcttgaaggaattctgatcaatcccacccactcttgaaaggaattctgaccaatcccacccactcttgaaaggaattctgaccaatcccacctgctcctgaaggaattctgactaaTCCTTTCACCTCCCaaaagaattctgaccaatcccactagTCAGGAGTTCTGACTAGTCCCATCCACACTTGAAGATATTCAGACTATTCCCCCTTGCTCCTGTGGAAATTCTGACCAATGCTGCTCACTCCTAAAGGAATTCTGTATAATCCTACGCATTTCCCTGCCTGCACCTGAAGGGATTCTGAATAATCCCCCCAGGACTTGAAGGAATTCTGATAAATCCTGCATGTTCCtagagttattatttttgtttgtatctgctagcaatattttctaataagcTTAATTGGTTCTGTTTCTGTGACACTGACCAAGATGaagcagttactaaggatgaatgaatgaaaactttCTTGTTGCCGTAGCTGTTTTTTTATGCAGCTAATATTACTCATAACTGTCTGTCACTGTTTTTACTAAAGCAAGCACACACTGCCACTCCAGCAGCTGTTTGAGGCTTCAGTTTTCAGTCAGGGAAACTGCTAGAATGCTGTTTAAAGTTGTCTTCAGTGAAACCACTCTGAGGCTTCAGGATTTTACCAGAACAATGTGGAAATATCACTTTCTCTCATTTACACCAATTAAGAATCTTGCAgcagattaattttctacactGGTATGGAATAATTGTTGCATGCTTTGCCCTCCACTGGTTTAGATAACGTTCTCAAACAGCTGCATGGAAGCCATAATGTTCTCgtcctgataaaaaaaacaaggacagaaagaatgaaaatgagacaga

Function

GO: NA

KEGG:

id description
ko04725 Cholinergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321760 lncRNA upstream 18 18918009 ~ 18918576 (+) True G271544
TU321758 lncRNA upstream 4967 18913257 ~ 18913627 (+) True G271542
XR_004579801.1 lncRNA upstream 491404 18426072 ~ 18427190 (+) True LOC117599343
TU321496 lncRNA upstream 570210 18298122 ~ 18348384 (+) True G271340
TU321384 lncRNA upstream 792802 18125611 ~ 18125792 (+) False G271235
TU321764 lncRNA downstream 3897 18923364 ~ 18923583 (+) True G271548
TU321766 lncRNA downstream 4348 18923815 ~ 18924071 (+) True G271550
TU321768 lncRNA downstream 10055 18929522 ~ 18931055 (+) True G271552
TU321770 lncRNA downstream 14444 18933911 ~ 18934140 (+) True G271554
TU321771 lncRNA downstream 18076 18937543 ~ 18940887 (+) True G271555
XM_026942472.2 mRNA upstream 12405 18900339 ~ 18906189 (+) True plpp5
XM_026942458.2 mRNA downstream 29431 18948898 ~ 18958044 (+) True trim69
XM_034312680.1 mRNA downstream 63666 18983133 ~ 19010793 (+) True aak1b
XM_034312681.1 mRNA downstream 63666 18983133 ~ 19010793 (+) False aak1b
XM_034312682.1 mRNA downstream 63666 18983133 ~ 19002146 (+) False aak1b
XM_034312828.1 mRNA downstream 148739 19068206 ~ 19073060 (+) True LOC117599383
trnam-cau_45 other upstream 455402 18463121 ~ 18463192 (+) True trnam-cau_45
trnar-ccu_16 other upstream 455483 18463039 ~ 18463111 (+) True trnar-ccu_16
trnam-cau_44 other upstream 456209 18462314 ~ 18462385 (+) True trnam-cau_44
trnar-ccu_15 other upstream 456290 18462232 ~ 18462304 (+) True trnar-ccu_15
trnar-ccu_14 other upstream 458730 18459792 ~ 18459864 (+) True trnar-ccu_14
trnas-cga_2 other downstream 15417 18934884 ~ 18934965 (+) True trnas-cga_2
trnas-uga_6 other downstream 15665 18935132 ~ 18935213 (+) True trnas-uga_6
trnas-uga_7 other downstream 16130 18935597 ~ 18935678 (+) True trnas-uga_7
trnas-uga_8 other downstream 16440 18935907 ~ 18935988 (+) True trnas-uga_8
trnas-uga_9 other downstream 17422 18936889 ~ 18936970 (+) True trnas-uga_9

Expression Profile