RNA id: TU321770


Basic Information

Item Value
RNA id TU321770
length 230
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G271554
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18933911 ~ 18934140 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGAATGCTGTTTTAATGGCAGAGCTAATGAATGctgttgtgtatatgtatttttttttatatatataactcaCCTGCATGTTTTGCAGCTGtctattttctttccttcctttttccattttctccatttcagTTGCTCACCAGCGGTCGCATTACCTTCCTGTAGCTCTATGCTTTTGGGGAGGGACAAATCTGAGCAAGAGAaagggacagtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321768 lncRNA upstream 2856 18929522 ~ 18931055 (+) True G271552
TU321766 lncRNA upstream 9840 18923815 ~ 18924071 (+) True G271550
TU321764 lncRNA upstream 10328 18923364 ~ 18923583 (+) True G271548
TU321761 lncRNA upstream 14444 18918594 ~ 18919467 (+) True G271545
TU321760 lncRNA upstream 15335 18918009 ~ 18918576 (+) True G271544
TU321771 lncRNA downstream 3403 18937543 ~ 18940887 (+) True G271555
TU321773 lncRNA downstream 8617 18942757 ~ 18943019 (+) True G271557
TU321754 lncRNA downstream 24028 18958168 ~ 18960267 (+) True G271540
TU321784 lncRNA downstream 26388 18960528 ~ 18960767 (+) True G271568
TU321785 lncRNA downstream 27162 18961302 ~ 18961555 (+) True G271569
XM_026942472.2 mRNA upstream 27722 18900339 ~ 18906189 (+) True plpp5
XM_026942458.2 mRNA downstream 14758 18948898 ~ 18958044 (+) True trim69
XM_034312680.1 mRNA downstream 48993 18983133 ~ 19010793 (+) True aak1b
XM_034312681.1 mRNA downstream 48993 18983133 ~ 19010793 (+) False aak1b
XM_034312682.1 mRNA downstream 48993 18983133 ~ 19002146 (+) False aak1b
XM_034312828.1 mRNA downstream 134066 19068206 ~ 19073060 (+) True LOC117599383
trnam-cau_45 other upstream 470719 18463121 ~ 18463192 (+) True trnam-cau_45
trnar-ccu_16 other upstream 470800 18463039 ~ 18463111 (+) True trnar-ccu_16
trnam-cau_44 other upstream 471526 18462314 ~ 18462385 (+) True trnam-cau_44
trnar-ccu_15 other upstream 471607 18462232 ~ 18462304 (+) True trnar-ccu_15
trnar-ccu_14 other upstream 474047 18459792 ~ 18459864 (+) True trnar-ccu_14
trnas-cga_2 other downstream 744 18934884 ~ 18934965 (+) True trnas-cga_2
trnas-uga_6 other downstream 992 18935132 ~ 18935213 (+) True trnas-uga_6
trnas-uga_7 other downstream 1457 18935597 ~ 18935678 (+) True trnas-uga_7
trnas-uga_8 other downstream 1767 18935907 ~ 18935988 (+) True trnas-uga_8
trnas-uga_9 other downstream 2749 18936889 ~ 18936970 (+) True trnas-uga_9

Expression Profile