RNA id: TU321785


Basic Information

Item Value
RNA id TU321785
length 254
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G271569
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18961302 ~ 18961555 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctgcaaggtgtatgtaaacttatgaacCCAAGTGTAAACCAGTGAATCTGTTCAACAGTTTTGAGATTTTTGGAGAGTTTTTGACTCTGGAGAGtttttatatgttaaaaaatgaaaaggttgAAGATGCTGTTGACTTAATTAAATGAGGATATATATATCCTAAAATGCTGAGATCTCATGTAATAGTCTCATATCACCATCAAGAGTGTTTAATAATATCCTTTAAACagagattaataaaataaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321784 lncRNA upstream 535 18960528 ~ 18960767 (+) True G271568
TU321754 lncRNA upstream 1035 18958168 ~ 18960267 (+) True G271540
TU321773 lncRNA upstream 18283 18942757 ~ 18943019 (+) True G271557
TU321771 lncRNA upstream 20415 18937543 ~ 18940887 (+) True G271555
TU321770 lncRNA upstream 27162 18933911 ~ 18934140 (+) True G271554
TU321787 lncRNA downstream 1800 18963355 ~ 18963780 (+) True G271571
TU321792 lncRNA downstream 49620 19011175 ~ 19012232 (+) True G271576
TU322140 lncRNA downstream 267506 19229061 ~ 19229423 (+) True G271853
TU322180 lncRNA downstream 372291 19333846 ~ 19335880 (+) True G271884
TU322221 lncRNA downstream 520942 19482497 ~ 19484904 (+) True G271923
XM_026942458.2 mRNA upstream 3258 18948898 ~ 18958044 (+) True trim69
XM_026942471.2 mRNA upstream 55113 18900743 ~ 18906189 (+) False plpp5
XM_034312680.1 mRNA downstream 21578 18983133 ~ 19010793 (+) True aak1b
XM_034312681.1 mRNA downstream 21578 18983133 ~ 19010793 (+) False aak1b
XM_034312682.1 mRNA downstream 21578 18983133 ~ 19002146 (+) False aak1b
XM_034312828.1 mRNA downstream 106651 19068206 ~ 19073060 (+) True LOC117599383
XM_034312829.1 mRNA downstream 120966 19082521 ~ 19101181 (+) True LOC113544111
trnas-uga_9 other upstream 24332 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 25314 18935907 ~ 18935988 (+) True trnas-uga_8
trnas-uga_7 other upstream 25624 18935597 ~ 18935678 (+) True trnas-uga_7
trnas-uga_6 other upstream 26089 18935132 ~ 18935213 (+) True trnas-uga_6
trnas-cga_2 other upstream 26337 18934884 ~ 18934965 (+) True trnas-cga_2
TU322151 other downstream 280154 19241709 ~ 19243905 (+) True G271863
XR_004579823.1 other downstream 414542 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other downstream 438043 19399598 ~ 19404927 (+) False LOC113544086
TU322526 other downstream 820872 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 820872 19782427 ~ 19786819 (+) True LOC113543969

Expression Profile