RNA id: TU322223


Basic Information

Item Value
RNA id TU322223
length 281
lncRNA type sense_over
GC content 0.43
exon number 3
gene id LOC113544004
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19489206 ~ 19520777 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acagtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACTCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGGCTAATAACTCTACATGTCCACCTGTAACATCCACagCTGAATATCTGATTGAGATTGAGATTGGTGCAGTAGATATAACAGTCCTGAAACTCTTAAGGAACCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322222 lncRNA upstream 1290 19489558 ~ 19494875 (+) False LOC113544004
TU322221 lncRNA upstream 11261 19482497 ~ 19484904 (+) True G271923
TU322180 lncRNA upstream 160285 19333846 ~ 19335880 (+) True G271884
TU322140 lncRNA upstream 266742 19229061 ~ 19229423 (+) True G271853
TU321792 lncRNA upstream 483933 19011175 ~ 19012232 (+) True G271576
XR_004579783.1 lncRNA downstream 320312 19817178 ~ 19825232 (+) True LOC113544143
TU322531 lncRNA downstream 321601 19818467 ~ 19825232 (+) False G272180
TU322559 lncRNA downstream 426169 19923035 ~ 19923178 (+) False gfra2b
TU322558 lncRNA downstream 444180 19941046 ~ 19943499 (+) False gfra2b
TU322611 lncRNA downstream 469261 19966127 ~ 20008197 (+) True G272246
XM_034312832.1 mRNA upstream 7071 19485272 ~ 19489094 (+) True LOC117599385
XM_034312831.1 mRNA upstream 27943 19449805 ~ 19468222 (+) True LOC117599384
XM_034312673.1 mRNA upstream 55810 19424147 ~ 19440355 (+) True LOC113544087
XM_034312674.1 mRNA upstream 55810 19425742 ~ 19440355 (+) False LOC113544087
XM_034312672.1 mRNA upstream 89851 19376359 ~ 19406314 (+) False LOC113544086
XM_034312834.1 mRNA downstream 34011 19530877 ~ 19540276 (+) True LOC117599386
XM_034312298.1 mRNA downstream 43512 19540378 ~ 19549194 (+) True LOC113544003
XM_026942462.2 mRNA downstream 152597 19649463 ~ 19665324 (+) True LOC113543930
XM_026942526.2 mRNA downstream 286458 19783324 ~ 19786831 (+) False LOC113543969
XM_034312420.1 mRNA downstream 295838 19792704 ~ 19805795 (+) True LOC117595711
XR_004579823.1 other upstream 86747 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other upstream 91238 19399598 ~ 19404927 (+) False LOC113544086
TU322151 other upstream 252260 19241709 ~ 19243905 (+) True G271863
trnas-uga_9 other upstream 559195 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 560177 18935907 ~ 18935988 (+) True trnas-uga_8
TU322526 other downstream 285561 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other downstream 285561 19782427 ~ 19786819 (+) True LOC113543969
XR_003404464.2 other downstream 285714 19782580 ~ 19786831 (+) False LOC113543969
TU322529 other downstream 297046 19793912 ~ 19805795 (+) True G272180
TU322530 other downstream 297046 19793912 ~ 19805795 (+) False G272180

Expression Profile