RNA id: TU322526


Basic Information

Item Value
RNA id TU322526
length 1209
RNA type TUCP
GC content 0.39
exon number 7
gene id LOC113543969
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19782427 ~ 19786831 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGGTAAAAGCACCTGaattctttactcaagtaaaagtacaacTACTTAATATCTTATTTTAATAAGTGCTCTGGTAAAAGTATGAAAGTATTTTACTTTAAGTACAAGAAagtttcaaaaaagaaaaagactccACTGCTAATTAAACTGATTGTAGTTACTTATGaaaacttactgacactggaCTCTCCTTCCATgccaatgttaaataaacatcatcttACAGAGCAACAACAATAGCAACAATTACACGTGTATTTTAAATCCGTTGGAGTGTCTGCATGTGTCTGGAGTGTCCACGGctgcaactactgtcagagctgctgatatagaaaatgaatcagcacctTTTGACCAGAATGGAGAATTCGCCAGTCAGAGTGTAAGGGGACGTTATCAAGCGCATGTTGTGAAGTCCTGCTTTTCTGGATTTGGCTCAGATTTGTTCTCTGGGTTAATTTTCTGGGACATGTTTTGGACTCTCTGTTTTTAGCCAATCATCTGCTTTAGGTCATTGATTTCAACACATCAGAGCGTCCCACCTTGAAAAATGTCTGTGCTGAAGAGGTCAGTGTTCGTGGGTTTTTTCCTGCTTGCTCTCGTCGCTGTGAGCCATGCAGCCTGCTGGCAATGGAAAATCAAAGAAGGTGCGACTCATTGTCAGGACCGCGTGGATAAGACGTGGCACCCGGTTGGATCCAGCTGGACAAACAGCGAGTGTGCACAGTGCTACTGCAGATCCGATTACGCTTCATGCTGTCATGGaTGGCCAACGTCCGTGTCTGGAGGATGCATCATTGAATATGATTATAAAAcctgtaaatatgaaataattaatCTTGAACATCCAAGTCTTTCATGTGGCGCTGCTGGAAAGTGATTGTGAAGATGAACTGAATTACAGTTTATCATAGAATCAGGAGACCTGAAgcacaaaaaaataacaggTTTAGTGAGACTGGAGATGACCTTGTGGAATAAAATTTGAATACCATCCGAGGCCAGCGAAATGTATAAACTGTTTAAGTATGAAATTGATCAGTGATCAAATCATATGAATTTTAAATCCAATTACTTTCACAATCAGAATCTGTGCATACATTCATTTTGACTAGCACTAAATTCTTCTTCTCACCTTTTGTTCCATGAAGCCATTTGGAAGATGATTTgcaaagacaaataaataaatcacttaatGAACACTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322223 lncRNA upstream 285561 19496165 ~ 19496866 (+) False LOC113544004
TU322222 lncRNA upstream 287552 19489558 ~ 19494875 (+) False LOC113544004
TU322221 lncRNA upstream 297523 19482497 ~ 19484904 (+) True G271923
TU322180 lncRNA upstream 446547 19333846 ~ 19335880 (+) True G271884
TU322140 lncRNA upstream 553004 19229061 ~ 19229423 (+) True G271853
XR_004579783.1 lncRNA downstream 30359 19817178 ~ 19825232 (+) True LOC113544143
TU322531 lncRNA downstream 31648 19818467 ~ 19825232 (+) False G272180
TU322559 lncRNA downstream 136216 19923035 ~ 19923178 (+) False gfra2b
TU322558 lncRNA downstream 154227 19941046 ~ 19943499 (+) False gfra2b
TU322611 lncRNA downstream 179308 19966127 ~ 20008197 (+) True G272246
XM_026942462.2 mRNA upstream 117103 19649463 ~ 19665324 (+) True LOC113543930
XM_034312298.1 mRNA upstream 233233 19540378 ~ 19549194 (+) True LOC113544003
XM_034312834.1 mRNA upstream 242151 19530877 ~ 19540276 (+) True LOC117599386
XM_034312833.1 mRNA upstream 261650 19489206 ~ 19520777 (+) True LOC113544004
XM_034312832.1 mRNA upstream 293333 19485272 ~ 19489094 (+) True LOC117599385
XM_034312420.1 mRNA downstream 5885 19792704 ~ 19805795 (+) True LOC117595711
XM_034312380.1 mRNA downstream 39289 19826108 ~ 19830268 (+) True LOC117599326
XM_026942865.2 mRNA downstream 66735 19853554 ~ 19943505 (+) True gfra2b
XM_026942564.2 mRNA downstream 231547 20018366 ~ 20023714 (+) True LOC113543999
XM_026942659.2 mRNA downstream 263799 20050618 ~ 20110301 (+) True itga1
XR_004579823.1 other upstream 373009 19376097 ~ 19409418 (+) False LOC113544086
TU322206 other upstream 377500 19399598 ~ 19404927 (+) False LOC113544086
TU322151 other upstream 538522 19241709 ~ 19243905 (+) True G271863
trnas-uga_9 other upstream 845457 18936889 ~ 18936970 (+) True trnas-uga_9
trnas-uga_8 other upstream 846439 18935907 ~ 18935988 (+) True trnas-uga_8
TU322529 other downstream 7093 19793912 ~ 19805795 (+) True G272180
TU322530 other downstream 7093 19793912 ~ 19805795 (+) False G272180
XR_004579787.1 other downstream 10954 19797773 ~ 19800518 (+) True LOC113544133
TU322533 other downstream 12203 19799022 ~ 19805795 (+) False G272180
XR_004579782.1 other downstream 39143 19825962 ~ 19830268 (+) False LOC117599326

Expression Profile