RNA id: TU322531


Basic Information

Item Value
RNA id TU322531
length 437
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G272180
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19793912 ~ 19825232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gctCCTGAAGAAGTCAGTGTTCGTGGGTTTTGTCCTGCTTGCGCTCGTCTCTGTGAGCCATGCTGCCTGCTGGTTCAAAGAAACCAAAGGTGCGACTCATTGTCAGGATTCCGTGGATAAGACATGGCACCCGGTTGGATCCACCTGGACAAACCGCAAGTGTACAAAATGCTCTTGCGACGCCGATTCCATGAGTTGCTGTGATGgATGGCCATCGCGCGTGTATGGAGACTgcatcattaaatattattataaaacttgTACATATAAAGTGATTAATACGAAGATTCCAGGTGGTACATGCTCTGGTGTTGGAAAGTGATTGTCAAgatgaaatgaattaaagtttatCGCAGAAGTAAGAGACCAGAGGCATAAAATAATATGCTCCTGATTACTTTGATCTGAACCTACAATAAAGCATTACTGAAGAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322223 lncRNA upstream 321601 19496165 ~ 19496866 (+) False LOC113544004
TU322222 lncRNA upstream 323592 19489558 ~ 19494875 (+) False LOC113544004
TU322221 lncRNA upstream 333563 19482497 ~ 19484904 (+) True G271923
TU322180 lncRNA upstream 482587 19333846 ~ 19335880 (+) True G271884
TU322140 lncRNA upstream 589044 19229061 ~ 19229423 (+) True G271853
TU322559 lncRNA downstream 97803 19923035 ~ 19923178 (+) False gfra2b
TU322558 lncRNA downstream 115814 19941046 ~ 19943499 (+) False gfra2b
TU322611 lncRNA downstream 140895 19966127 ~ 20008197 (+) True G272246
TU322615 lncRNA downstream 398245 20223477 ~ 20226693 (+) True G272249
TU322678 lncRNA downstream 414662 20239894 ~ 20240346 (+) True G272305
XM_034312420.1 mRNA upstream 12672 19792704 ~ 19805795 (+) True LOC117595711
XM_026942526.2 mRNA upstream 31636 19783324 ~ 19786831 (+) False LOC113543969
XM_026942462.2 mRNA upstream 153143 19649463 ~ 19665324 (+) True LOC113543930
XM_034312298.1 mRNA upstream 269273 19540378 ~ 19549194 (+) True LOC113544003
XM_034312834.1 mRNA upstream 278191 19530877 ~ 19540276 (+) True LOC117599386
XM_034312380.1 mRNA downstream 876 19826108 ~ 19830268 (+) True LOC117599326
XM_026942865.2 mRNA downstream 28322 19853554 ~ 19943505 (+) True gfra2b
XM_026942564.2 mRNA downstream 193134 20018366 ~ 20023714 (+) True LOC113543999
XM_026942659.2 mRNA downstream 225386 20050618 ~ 20110301 (+) True itga1
XM_026942459.2 mRNA downstream 292293 20117525 ~ 20123709 (+) True sub1a
TU322529 other upstream 12672 19793912 ~ 19805795 (+) True G272180
TU322530 other upstream 12672 19793912 ~ 19805795 (+) False G272180
TU322533 other upstream 12672 19799022 ~ 19805795 (+) False G272180
XR_004579787.1 other upstream 17949 19797773 ~ 19800518 (+) True LOC113544133
XR_003404464.2 other upstream 31636 19782580 ~ 19786831 (+) False LOC113543969
XR_004579782.1 other downstream 730 19825962 ~ 19830268 (+) False LOC117599326
trnae-cuc_36 other downstream 23523 19848755 ~ 19848826 (+) True trnae-cuc_36
TU322750 other downstream 573048 20398280 ~ 20398947 (+) True G272367
TU322768 other downstream 598167 20423399 ~ 20429143 (+) True G272374
TU322810 other downstream 715093 20540325 ~ 20542954 (+) True G272408

Expression Profile