RNA id: TU322533


Basic Information

Item Value
RNA id TU322533
length 439
RNA type TUCP
GC content 0.43
exon number 3
gene id G272180
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19793912 ~ 19825232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgctCCTGAAGAAGTCAGTGTTCGTGGGTTTTGTCCTGCTTGCGCTCGTCTCTGTGAGCCATGCTGCCTGCTGGTTCGAAAAAACCAAAGGTGCGACTCATTGTCAGGATTCCGTGGATAAGACATGGCACCCGGTCGGATCCACCTGGACAAACCGCAAGTGTACAAAATGCTCTTGCAACGCTGATTTCATGGGTTGCTGTGATGgATGGCCAACGCGCGTGTCTAAAGACTgcatcattaaatattattataaaacttgTACATATAAAGTGATTAATACGAAGATTCCAGGTGGTCCGTGCTCTGGTGTTGGAAAGTGACTGTCAAgatgaaatgaattaaagtttatCGCAGAAGTAAGAGACCAGAGGCATAAAATAATATGCTCCTGATTACTTTGATCTGAACCTACAATAAAGCATTACTGAAGCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322223 lncRNA upstream 302156 19496165 ~ 19496866 (+) False LOC113544004
TU322222 lncRNA upstream 304147 19489558 ~ 19494875 (+) False LOC113544004
TU322221 lncRNA upstream 314118 19482497 ~ 19484904 (+) True G271923
TU322180 lncRNA upstream 463142 19333846 ~ 19335880 (+) True G271884
TU322140 lncRNA upstream 569599 19229061 ~ 19229423 (+) True G271853
XR_004579783.1 lncRNA downstream 11383 19817178 ~ 19825232 (+) True LOC113544143
TU322531 lncRNA downstream 12672 19818467 ~ 19825232 (+) False G272180
TU322559 lncRNA downstream 117240 19923035 ~ 19923178 (+) False gfra2b
TU322558 lncRNA downstream 135251 19941046 ~ 19943499 (+) False gfra2b
TU322611 lncRNA downstream 160332 19966127 ~ 20008197 (+) True G272246
XM_026942526.2 mRNA upstream 12191 19783324 ~ 19786831 (+) False LOC113543969
XM_026942462.2 mRNA upstream 133698 19649463 ~ 19665324 (+) True LOC113543930
XM_034312298.1 mRNA upstream 249828 19540378 ~ 19549194 (+) True LOC113544003
XM_034312834.1 mRNA upstream 258746 19530877 ~ 19540276 (+) True LOC117599386
XM_034312833.1 mRNA upstream 278245 19489206 ~ 19520777 (+) True LOC113544004
XM_034312380.1 mRNA downstream 20313 19826108 ~ 19830268 (+) True LOC117599326
XM_026942865.2 mRNA downstream 47759 19853554 ~ 19943505 (+) True gfra2b
XM_026942564.2 mRNA downstream 212571 20018366 ~ 20023714 (+) True LOC113543999
XM_026942659.2 mRNA downstream 244823 20050618 ~ 20110301 (+) True itga1
XM_026942459.2 mRNA downstream 311730 20117525 ~ 20123709 (+) True sub1a
XR_003404464.2 other upstream 12191 19782580 ~ 19786831 (+) False LOC113543969
TU322526 other upstream 12203 19782427 ~ 19786819 (+) False LOC113543969
TU322527 other upstream 12203 19782427 ~ 19786819 (+) True LOC113543969
XR_004579823.1 other upstream 389604 19376097 ~ 19409418 (+) False LOC113544086
XR_004579782.1 other downstream 20167 19825962 ~ 19830268 (+) False LOC117599326
trnae-cuc_36 other downstream 42960 19848755 ~ 19848826 (+) True trnae-cuc_36
TU322750 other downstream 592485 20398280 ~ 20398947 (+) True G272367
TU322768 other downstream 617604 20423399 ~ 20429143 (+) True G272374
TU322810 other downstream 734530 20540325 ~ 20542954 (+) True G272408

Expression Profile