RNA id: XM_026942865.2


Basic Information

Item Value
RNA id XM_026942865.2
length 6172
RNA type mRNA
GC content 0.41
exon number 10
gene id gfra2b
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19853554 ~ 19943505 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagagagaacagaacagaaattaCACTCGGTATTATCCTGCCTGGAAGAACAGTCTTATATTGCAGTATTTATTGCATGAATTCATCAAACTAATTTACACACTAAGCTTTtacttcttattattattattactactattgttattattgttattattgttattattactattattattgtggcTGCTCAGTGAGTACAGATGCGCAGTGATGAGGAAATAGTCTGAATTAGTCTCAGAAGTTGTGACGTGACGTTCTGggaataaaatttttaaaaaaaatggcacaagGAAAAGTTTAACCGGGAAAAGCCGAGCTTTGTGTCCGCATGGACGGGAAAACATCCGCGGATCTTCACGCAAGGATGCCGTGCTGGACTCGGTGATCTCCTCCCGCAGACATCTCCACAACTCTCTCTgcttctgctgcttcttctgcttctgcttcttttAAATCCCAGTCTTTTCCCCTGGATGACAAGTGGAGCTACAGGCATTTGGATGTGAAAGAATTCAATAAAAGGCGATTAGAGATGGAAATgaatcatttcttttaaaaaaaaaaaaaaaaaaaacgggatCACAGCATCTTCAGCCGgatttatcatgattttattaaatattttgacaCTCCTGTTTTTAGCGGATGAGGTGGTTGCTTTGGAGAATGGCGAATGGACGGCCCCCATGGACTGTTTACGGGCGAGCGAGATGTGTAACCAGAACGCGCAGTGCAGCTCACGTTTCCGTATCATGCGCCAGTGCCTGGTGGGCCGAGACCGCAGCGCCATGCTGGAGAATAAGGAGTGCCAGGTGGCGCTAGAGGTCCTGCAGGACAGCCCGCTGCACCACTGCCACTGCAAGAGGGGCATGAAGAAGGAGCTGCAGTGCCTGCAGAGCTACTGGACCATCCACATGAGCCTCAACGAAGgaGAAGAACTTTACGAGACGTCCCCCTATGAGCCAATGCATTTCTCTGATGAATTCCGACTCGCTTCAATTATTTCAGccATGGACTCGGCCTCGTCTAAGGGCACCGTGTGTCCCGAGTCCGTGAATTCATGTAATCCATGTCTGGATGCTGCGAAGGCGTGTAACCTGAATGCAGTGTGTAAGCGTCAGCGCTCGGCCTACGTCACTGCGTGTAGCCGCTCTGCGCCCATCGCGCTCTCGCCCGAGCCGTGCAGCCGTAAACGCTGCCACCGGGCGCTGCGCCAGTTCTTTGAGCGCGTGCAGAACGATCTCAGCTACCCACTGCTCTTCTGCTCGTGCAGGGACAAAGCGTGTGCTGAGCGACGACGCCAGACCATCGTACCCACCTGCTCTTTTGAGGAAAAGGCGAAACCGAACTGCCTCGAGCTCCGGAGGATCTGTCGATCAGATGCACTCTGCAGATCCAGATTGGCAGACTTCCACATGAACTGCCAGACGACTCCGCACTCGATAACGAGCTGTCCTAATGACAACTACCATGGCTGTCTCGTGTCCTACGTTGGGCTTATAGGATCAGATGTGACCCCAAACTACGTGGATGCCAACCACGCCaacatcaccatatcaccaTGGTGCAGTTGCCGTGGCAGCGGTAACCAGGAGACAGAGTGTGAAGCTTTTCTGCGTGACTTCAGAGAGAACGCATGTCTAAgaAACGCAATCCAGGCGTTTGGTTATGGAGCGGACGCTGGTTTCCTTCCATTCACCGACTCTCATTCTGTCGTCCCATCTGAAAAACCCAACCTTCATCCTGCCATTATCACTAAACCCGACATCATCACCAACGACGTCAAACCAGTCGAGAGTGCGTGTGTTTTCTCCACATGCGCTAATCTTAAGGACGGTGCAGAGAAGTGTTCTCCCTCCAGCAGTTTTGAATGTGTAGATGAGAACATTCTAGACTCCGACATGGACAGCTCCATCGACTCTCATCAATCCGAGAACGACAGACACTCATCTGCGTATCTGTCCAGCGTCTCCACTGCAACCATAGTCCTGTCCATCGTACTTGTCATTCAGGAGCACCATTAAGCTGTCGCAGCCTGtcagaataaaaacacatccaTCTGTACGAACAAGTCGTCATTGCACGAGAAGAGAGCAGATACAGGAATCCGGGGGCGTGAGCTGTGAATCGCTTGTATTTCTCAAACCAGATCATCCTTCACTAATATAATTAGACAAAACTGGATTGTGTTTgctaactgatgaaataaaaatcagtgaTTAGTGCTGACTCAGACTTTCGGGCCTGACCGTATGGtgtatgaaaatgtgaaatggaAGTATATTTAATACAGCTTTTCGAAGCTAACATGGAGGCATGTGCTGATGTTACATTTCCATATCAACATAATTTCTATCGTCACAATTTGGGATGCATCAGTACTGAGTACGAGTACAAGTACGCTTTTGGTACTCATCTTTACCAAAATGAGTAAcgtactgagtactgagtactgagtattAACCAATCAGGGGCATCGTGGAACATTTTATGTAGCTCTATTTATGTTGGTGGCTGCAGTCTGTTGCTAGCTCatgaagagttttatttttgcaatgttattgcttttaaacagcatgtttaacaaagaacacGATGATGGCTGTCGTGAGCAACATCAGCGAGTGTGGTCCTTAACGATGATGTGAATTGCACCTTGACTCGAGAGCAAAGTTTAAACTAGCAAAAGAAAGCGCACGTGTCtcggtgctcagtgctcgcagaactgaactgCTCTCATGTGCGATCATTTCTCCGGCTTCACAGCTCCACACtcacaaatatgtgtgtgtgtgtaattcacaACACCTTGTGCTCGTTCTTAATAACCATGCTCACTTGTACTCCTCTGAAAGCCCAGGTCAGCCGTCCTCacgctctctattaaagatactgttgaAAGGGCGTAAGATTTTTTCTCAGGTTACTTgaattgtaggaagatgctgtagttcctcatcttgattttgtttatttgactaTTTGACtgccatcattaatcatgaaatacatcACGAATGCTGTCACTCTGTGTCCTCTGTTCATTAGTGTGGCAACTACACAGCAAAAtccacagtgttgaattaacacccagAGTGTTGAAGTaacagtgtttatatatgtacagttGAACACAAATGAACTCTAAAAGTGTGAAATCAACACTCTGTGTAGGATTTTGCTGTGTAGGCTTACGTCACATGGCATCACATAGTATTAGATTTTAGTatctgggcttttttttttttgaatatgagtaaatgagcacagtatcAGACTGATCCCTAATTTCATTATCAGTATTGCTGCATCCCTAATCACACTATTGTATTACAAAATGATTAATTGCCATTAGAGATGGACATCCAGCATGTGATGCTGCCTTCATATTATACCAGTGTGAACGACGGTTATTGTAGAAGACAGCTGTCTTAATGTGCCTGCCAAATGGGACAGCCTTTATCTCAGGATATTAAGGCTGTCCAAAAATGGTGCCGGGTGTTTGGGGCTATTTTACAGGTTTGGTATAACCATAACAGTATTGTGCATATTAACTATAATAGTATATTGTATgtgattatcagcacatgccaGTCACATGACACAGGCAGCACTGAACCGCTGGAATGAACTATTGATGAACAAGTTGAACAAAGTTGGTACATTTTCAGTTCATAATATGTAGGTCAATGCTTCAGCAGCTGGAGTttgaacagaaatgtaaaagacGATGGGCTGAGGTGAGTTAACATGACTTCTTCATGAAGGATTTCTGAACCAACATCCATTTGTAGTTCCTAGATCAACTTTTCATTTAAgcgattaatttattttactgtcatCAGCGTGCGTCTCTGACTCCTCCCACTCCCGAACATCTTCAAAATTCCCAAATTGGTTAAAATGGAAAACCATCATGTAGCTCTTCATTGCAATTCATTGCAGTTCATGACtttaatacacactaacacagctaAATTTGAAGATGCATCTTTTTACATCCACactaaaacagtgaaaacataGTTTTTGACACTGATGCAAAGTCATGTGACCTCCGCAATTCCAAGATGGCGGATCCCCCGATCGATGCTGTTTTCTATATTAAGTATTCCAATTTCATGTTTGAATACTTTCTGTAGTGTATAAGCACACTGCTATCAATTATATTCTTGATGTCAAACGAAATGTCTTGatgtcaaatattttattttaatataataggtTTTTCACCCTGTGTGCGTACTTAGCAGGCTCTTTTCTATTGTTTCTGCATTTCATTGTGCATGGAACACTTTCAGGAAACGGACTGAATTCCCTAGTGTGGCCAAAAAAATTACCTTTTTCAAATGTGTTAGTATCGACTAGGTCATAGTTATCCAGTTAATCCCAAACCCAGAAGCCAGCTTGAGTTCAGCTTGGCAGTGCACTAGCTACTGTAGCTCAGCAATCTCACTACAAGCACAAAGCCTTCATACAGCTTTATTATTGTCAATACACAATATACTGTGTATCACTGGAAAATCACACATTTTGGAAagtaaatttttaaaagttcagATTATATTAGCCATCGAGGCTCAGATTACTAATAGTGGTTGTTTGACTAAATATCCAACATTAAGAATGGCATAaaacatgctgctataggaaaataatcaacaccagggTGGTGTGTTGTAACCCGATGCAAATAACAGCAAACCTATTTTTTtcaataccacagcaatttgccaacaattaagtttttttatttatttaaaaaaaattacagatcaTACTTTTGtctctttatagttacatttaatgttgttacaATAGAAATTCTAGAAACAAAAAAGCTGTTACCTTAGAAGCGATAATgtagagtgcattaatataaacctgtgatttgaatcacAGCCAGTATTTCTGTCAGCGCTGCTAACACATGACCcctgaagtgcattatttttgtataacagcacaatcCAGAGTCtattattccacttataccacagcgatttgccaatgattacaatgtttcatttattcgTGTACAAAACATCAcgcattttaacagtttagtTAGACTTAATGTTATAGAatgtctgagagacaagttagttcctgttctcacttatgttataagttacaataaaaatagttattctctcaccagcctctctttctctctctctcaaaaaccGCAGTCATTTGACCAAGAAACcgtaaagtgtaaactcctctcaGCCGAAGACTTTCTTGTGCTGATAAATTTCACAAAGCACCGTGAGTGCTACAAAGTGCTTATaaccgagactccttccataaatgttaaataaatgtctcctaacaaaaaaatcatcaccACATCAATAGTTAtacgttttactttgttaaactacgcgtctttttatccatttatttttagtcttagattatttgcagcgtccaccatacaagtccctgtgtatgagctgttactatagaaacaataaggtattagaacaaGGGTACTAATATTAACATGACGTTCATGTTACAGTCGGAAGTTCCTGTGCTGTTCTACAAATCATGCAGtgcttctgactaatcagattcgagcattcaacagcactgtgacaTTCCGAAGACCTTTAGACGCTGATCTGAGTTTACAAAAGATTACAAAAGCACAAGTGATTAACACATAAATCCTACACAATATGGCTACATGAACTAATGAATTAAAGAGGAGTAGGAGGTGCATGCTGATGACATCACATAacagtgtgattaaaagaaatcCAGGCTCATGTTCACAATACAATGTCACCAATGCTCTTCTTCAGTTGTTAGTATgtcattcttcattttttttcttttcacttcaccCAAGAGACTTGGATCAGCGCCCAAGTTGAACAAAGCTTCATTTACTGATTGCGTAAATTGTTCGTGTTTTATAGTGTGCAATCTATCGTGGGGCCTTAATTTTGTTTTGCTCTCCggctttgtttttctctctcttatgtCACGGTTTCAGGACGGGGCACGACGGACATATTATTTCTGGAAGAACAAACGTTTTCTTTAATCTGTGCTGCTTTAAACATTGAGTCGGGGGGAGGCAGACTCGAGAATGTGTCTGAAATATTTGTCCAAGtctcaataaaaagaaaatgtcatgttGATAAAGTGTTA

Function

GO: NA

KEGG:

id description
K19895 GFRA; GDNF family receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579783.1 lncRNA upstream 28322 19817178 ~ 19825232 (+) True LOC113544143
TU322531 lncRNA upstream 28322 19818467 ~ 19825232 (+) False G272180
TU322223 lncRNA upstream 356688 19496165 ~ 19496866 (+) False LOC113544004
TU322222 lncRNA upstream 358679 19489558 ~ 19494875 (+) False LOC113544004
TU322221 lncRNA upstream 368650 19482497 ~ 19484904 (+) True G271923
TU322611 lncRNA downstream 22622 19966127 ~ 20008197 (+) True G272246
TU322615 lncRNA downstream 279972 20223477 ~ 20226693 (+) True G272249
TU322678 lncRNA downstream 296389 20239894 ~ 20240346 (+) True G272305
TU322720 lncRNA downstream 366086 20309591 ~ 20309876 (+) True G272347
TU322742 lncRNA downstream 466218 20409723 ~ 20465046 (+) False G272361
XM_034312380.1 mRNA upstream 23286 19826108 ~ 19830268 (+) True LOC117599326
XM_034312420.1 mRNA upstream 47759 19792704 ~ 19805795 (+) True LOC117595711
XM_026942526.2 mRNA upstream 66723 19783324 ~ 19786831 (+) False LOC113543969
XM_026942462.2 mRNA upstream 188230 19649463 ~ 19665324 (+) True LOC113543930
XM_034312298.1 mRNA upstream 304360 19540378 ~ 19549194 (+) True LOC113544003
XM_026942564.2 mRNA downstream 74861 20018366 ~ 20023714 (+) True LOC113543999
XM_026942659.2 mRNA downstream 107113 20050618 ~ 20110301 (+) True itga1
XM_026942459.2 mRNA downstream 174020 20117525 ~ 20123709 (+) True sub1a
XM_026942461.2 mRNA downstream 174964 20118469 ~ 20123709 (+) False sub1a
XM_034312904.1 mRNA downstream 182030 20125535 ~ 20154803 (+) True pstpip2
trnae-cuc_36 other upstream 4728 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 23286 19825962 ~ 19830268 (+) False LOC117599326
TU322529 other upstream 47759 19793912 ~ 19805795 (+) True G272180
TU322530 other upstream 47759 19793912 ~ 19805795 (+) False G272180
TU322533 other upstream 47759 19799022 ~ 19805795 (+) False G272180
TU322750 other downstream 454775 20398280 ~ 20398947 (+) True G272367
TU322768 other downstream 479894 20423399 ~ 20429143 (+) True G272374
TU322810 other downstream 596820 20540325 ~ 20542954 (+) True G272408
TU323423 other downstream 1532607 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 2425769 22369274 ~ 22374875 (+) False tmem230a

Expression Profile