RNA id: TU322720


Basic Information

Item Value
RNA id TU322720
length 246
lncRNA type intronic
GC content 0.37
exon number 2
gene id G272347
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20309591 ~ 20309876 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGACATCTCTTTCTGTCACATTCGTGCTAACTATGCTGGATTTTCTTTATTGGATTATTTGTTCTGTTTGACAGGGTTGCCATTCACAGGCCCCATCCAAAACACCAAACATTTCCTATCCAAACACCATACACTGATTTTTATGTCTAACAGCATGGCTGCATTTACAAATTGATATTGATATAAAAAAGGAATACCAtgcaatacatttaaaaaaagCATTGCAGTGCAGCTCACAGTCCTCT

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322678 lncRNA upstream 69245 20239894 ~ 20240346 (+) True G272305
TU322615 lncRNA upstream 82898 20223477 ~ 20226693 (+) True G272249
TU322611 lncRNA upstream 301394 19966127 ~ 20008197 (+) True G272246
TU322558 lncRNA upstream 366092 19941046 ~ 19943499 (+) False gfra2b
TU322559 lncRNA upstream 386413 19923035 ~ 19923178 (+) False gfra2b
TU322742 lncRNA downstream 99847 20409723 ~ 20465046 (+) False G272361
TU322744 lncRNA downstream 99847 20409723 ~ 20456458 (+) True G272361
TU322739 lncRNA downstream 132823 20442699 ~ 20447678 (+) False G272360
TU322740 lncRNA downstream 132823 20442699 ~ 20447678 (+) True G272360
TU322741 lncRNA downstream 132823 20442699 ~ 20447678 (+) False G272360
XM_026942552.2 mRNA upstream 94837 20182654 ~ 20214754 (+) True mtrex
XM_034312904.1 mRNA upstream 154788 20125535 ~ 20154803 (+) True pstpip2
XM_034312905.1 mRNA upstream 154788 20125535 ~ 20154803 (+) False pstpip2
XM_026942459.2 mRNA upstream 185882 20117525 ~ 20123709 (+) True sub1a
XM_026942517.2 mRNA downstream 20610 20330486 ~ 20342383 (+) True sftpba
XM_034312335.1 mRNA downstream 20610 20330486 ~ 20342383 (+) False sftpba
XM_026942518.2 mRNA downstream 20610 20330486 ~ 20342383 (+) False sftpba
XM_026942697.2 mRNA downstream 298939 20608815 ~ 20623941 (+) True mpx
XM_026942814.2 mRNA downstream 337931 20647807 ~ 20658625 (+) False loxa
trnae-cuc_36 other upstream 460765 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 479323 19825962 ~ 19830268 (+) False LOC117599326
TU322530 other upstream 503796 19793912 ~ 19805795 (+) False G272180
TU322750 other downstream 88404 20398280 ~ 20398947 (+) True G272367
TU322768 other downstream 113523 20423399 ~ 20429143 (+) True G272374
TU322810 other downstream 230449 20540325 ~ 20542954 (+) True G272408
TU323423 other downstream 1166236 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 2059398 22369274 ~ 22374875 (+) False tmem230a

Expression Profile