RNA id: TU322859


Basic Information

Item Value
RNA id TU322859
length 3511
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G272450
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20716511 ~ 20737500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatttttttttttttttttttttttttttttttttaaaccataaaaGGCTAGTGCTGCTAATGGCAAGTGAAATCTGAGTGGACTCTCCTTAgtgttatgcaaatgagaacatgcaaacaggTTCCATCAGGCTGTGAGGGAGCAGTGTTACCATATACATGTGAAGCACAAACAGCACAAGCTGAAGAGGCAACCGAGGCATCCAGACTCGATTCATGGAGCTCTAAAGGATCATTTACAGTTTTGCataacaaaagaaagaatggTGTGAATGGGGAGAACTTTCCAGGCAGAATTACTGCTGCTGAATCTGGGCTTGCTGGGGTGAGGGAGTTATTTCTTTTAGGATTCCCATCAATTTACCAACAGCAGCAATGCCAGTCCCAGCAGGGGCTTTATAACagtaaatgagttttaaaataaaagccagAACTGGGCAGGACATGTCGAGAAATGAGACTTCATCCCACAACGGGGAAGTGCTTTCTCTTTACTACTGGACTGCATTTTTTATAGGCTCTAACTAGACGACCACTTCAAGCTCACCAACAGCAGTGAAATGACGAATCGCAGCATGCAGCAGCCCTCATAATAAGCTGCTACGCtcctaatcttttttttgtgcaacCATGTTATTTGCATTAAGCTTCGAGAACATTCCTCACTCCTAAGCCTGCAGGGCCTCAGCACAACACATTAGAGTGGTGGAAATGATGGCAGTGCTTTTCAAGTCTTAGCAAGCGATGCGATGAGTTTTGTACCGCTTCAGAAAAATAATTGGCGTGTGCATCTCTCATTTGTGTTCAGTTTGTTAAATTTAGATGAAAAGCCTGTATAAGGGTACAGTCATTGCAGTTGTTTAACGCCTAAAGGAATCAGGTGCGTGACCTTTATTTATTAGAGATCATGTACCCTATAAAACAAAGGCTCAACCCTAATCTATCCAGTGCTTTGAAGAGTAATTTGATAAAAATGCACTAAACCATGAGTCAAGGCAAATTCTGCAAGGCAGCAGATGTCCTGTAGCAGGGTTGcatcagaaaacaaaatgttccAGCCCTCCAGGTGCGAGAGTAATGATGACGATGTTCGAGAATGGTACGGCTGAACCCAAGTAAACTGTGCCTAGAGGAAGGTTTAGTGCTCCTGAAGCTAATTCAGAAGCAGATGACATGGTGAAGCCAGCAAAGTGCAGCCAAATCGCAGGAGCTAATCCTCACATTAATCTGGTTCCATTACCGGAGACTACACGGGTCAAGACCAGAGCAGGAGACTTTGTCCaactgcatgcatgtgtgtgagtgtgtgtgagagagaggggaggaatGTCTAAGTTTAAAAATGAGCACGTCTCACAACCCTGTCTGGTTAAAATGTGATGAAATTAGAGTTTGGTCTGAATATCAGCTCAAAGCTAGAGGACATGTCTAACCTCTTTGTAAACCTCTACATCTAATCTCTCTCCtcaaattaaaattgaaatcaTTTAAAGTGGATCAAATGTAAGAGTGGTTAAAATGTCAATGATAAAGACACTGACCGTTAGCAAACGTACtcttcttcattttaaaaaaaaaaaaaaaaaaggaaatctaATCTTAAACCTTGAACTTGTCCATGTTCAGCCTTCTCATTTTAAACTGCATCACATCAAATGTGACATGCATTAGGAAGATTTTGAATTTTCAtacttttcctcttcttcttcttcttttcttccagATGTTAAgctaaaagtctaaaaaaaaaaaaaaaagaattggtcCACTGACAAAGCGACCAGCTAGCTTTTGctcaacaaatattaattctCATCTAACATACAAAATACTCTTTGTAAATCCTTGTGCAGGCTGATTGatttaaatcagtgtgtgtaggtgagcCTGAAGGTGTACGTGCATATGATGCACCTTCCCATGCCTAATAAGAGTGCATACAGGGTACACACTCCTATCTGTGTATCTTGTCATGCTCTGGCCTGTAGCCTTCATATACGGCCCAGGCCAGCTGACTTCTTGCATTGTTGATCCCTGTAGgtagaagaaaacaaaaaggagcaaaaaaaaaagtgctcattTAATAGGATTCCAAAATATTATGCATAAAAAATGTatgcacagtttaaaaaaaaaagaaaaaaggaagctaCTATGATGAAGATTCAGTTTGATGGATGACAAGTGTActccattgattttttttttctttcctctgtgcTCAAAAAGGACAGACAGCCTGATACAGAGGTcaagaatacaaaaaaacacCGCAAGACCATGTCCATCGAGCTTCCCTGGTTAGTAATCTTAACGGCGAACACAAATAGTGTTGCGTCACAGTCTGTTAGGCCTCGAGTTAAGGGAAATGACTTGCGCATAAAGAGAGACGGATGTGACAGAAGAATAATACTCACTCGGTGCGCCTGTAAACATGATGGAGAACAGGTTGATTCCCATAGTGACAGCGTAGAAGACAGGCAATGCCCTGAGTCCGTTGGGAACCGGATCCTtctacaaacacagaaacaaagagagaaaaattttAGACACCTTAATTGTTTTCTCCAAATTGCAGCCATTATCTCTAATCACACAGAGAGGCTTCAGCTGCAAGTGTGTCGGTAAAACCTGCGCAAAAAGAAGCAGCACGTTTGCATGCTGTCTCTCTGGTCTAGAATGTCCCCATTGTGGCGCCTCGGCCATTATGCTAATTCAACCTTCGACATGACTCATGGAGGGAGAGGTTTCCTGTTCTTACCTTCTGCAAGATAAACATGCGGACAAAGTAGAAGAGAACGGCAGACATGAAGCCGGAGAGGAGCGGGGAGAGGAACCAAGACGCAACTGTAAGGGGGGGAAAGAAACAGGACATGAATATAGGGCAGAACACAGGTAACAGTCCTGATTTAAAGGAACACTCGGGCATTTTCAGATTAATCATGTGCAATTTTGACACATCTCAAACCTGAGAACTAACTTTTAATGGATGTTTAAGGGCATAATTCACTCAATACTGAATATTTATCAGCTTGTAAGATTCATCCATTTCCAGACAAGACTATTTTTGTCTATAAAAAAAGAGCAGGCAAGGCAAGAATCCGTGGTTACCAACAGCTTTGCAGCTCAGATAGAGCATGGATACCGCAAAACTCTTCATGAACGTCAGTAACCAGAGCTACTTTTGTTACAAAGTTGTATAAAACTCCATAAGAAAAGCATTAGTGATGGAGACTGGCGTGTCCATTTCATGTTGTAACCTGCATTGTTCAAGTGCAATGGTTATGTCGTAATGTtgaaaatttttttcaaaatgtctaTTGACAAAAAATCCAGTAACTCCCCTTAGACTcccactgtgtttgttttacagtaaaatgtaaTTACACACTGACTACAAAAACAATCCCAATGGCAAAGAATTAGTTTTTGGGACTTTCATATATTGTTAAATATACTTTTCATGAGTCATTACTCAGATTTACAGTCAATTCAGTAGTGACACATTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322835 lncRNA upstream 56217 20565033 ~ 20660294 (+) True G272427
TU322832 lncRNA upstream 152447 20562176 ~ 20564064 (+) True G272426
TU322744 lncRNA upstream 260053 20409723 ~ 20456458 (+) True G272361
TU322887 lncRNA downstream 11861 20749361 ~ 20749647 (+) True G272470
TU323226 lncRNA downstream 190122 20927622 ~ 20931583 (+) True G272770
TU323264 lncRNA downstream 252843 20990343 ~ 20990551 (+) True G272803
TU323409 lncRNA downstream 622049 21359549 ~ 21361642 (+) False LOC113544125
TU323425 lncRNA downstream 742400 21479900 ~ 21488039 (+) False G272940
XM_034312564.1 mRNA upstream 5485 20702515 ~ 20711026 (+) True pcyox1
XM_026942866.2 mRNA upstream 18848 20684972 ~ 20697663 (+) True gmcl1
XM_034312907.1 mRNA upstream 46024 20663103 ~ 20670487 (+) True snx24
XM_026942813.2 mRNA upstream 55416 20647809 ~ 20661095 (+) True loxa
XM_026942814.2 mRNA upstream 57886 20647807 ~ 20658625 (+) False loxa
XM_034312698.1 mRNA downstream 12673 20750173 ~ 20761668 (+) True stard7
XM_034312699.1 mRNA downstream 12675 20750175 ~ 20761668 (+) False stard7
XM_026942488.2 mRNA downstream 106825 20844325 ~ 20864249 (+) True smarcad1b
XM_034312293.1 mRNA downstream 107202 20844702 ~ 20864250 (+) False smarcad1b
XM_026942788.2 mRNA downstream 127065 20864565 ~ 20870543 (+) False ska1
TU322810 other upstream 173557 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 287368 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 317564 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 867685 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 886243 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 738612 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 1631774 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1884928 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 2387867 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 2527953 23265453 ~ 23274170 (+) False rc3h2

Expression Profile