RNA id: TU322887


Basic Information

Item Value
RNA id TU322887
length 287
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G272470
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20749361 ~ 20749647 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGGTCACTCTGCACCAGCGTCAGACTCAGGTAGGAGACATGGCTCAAAGTTTAAAAGCAGGATTGTAAGTTAGTTCTAACTTTCTTTCGTTCCCTGGTTTGCCcttgagctcgggttactgacTGTCTTGAGTTTCACATGTTGACCCCTTGACCACATGGGTTTCTTCCGGCTTCTCCGGTTTCGTCTCATTGCCCAAAATATGCCAGTTGGTGAATTTGTGACTCTGAATtgcactaggtgtgaatgagtgattgaacatgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322859 lncRNA upstream 11861 20716511 ~ 20737500 (+) True G272450
TU322857 lncRNA upstream 24167 20659603 ~ 20725194 (+) True G272448
TU322835 lncRNA upstream 89067 20565033 ~ 20660294 (+) True G272427
TU322832 lncRNA upstream 185297 20562176 ~ 20564064 (+) True G272426
TU322739 lncRNA upstream 301683 20442699 ~ 20447678 (+) False G272360
TU323226 lncRNA downstream 177975 20927622 ~ 20931583 (+) True G272770
TU323264 lncRNA downstream 240696 20990343 ~ 20990551 (+) True G272803
TU323409 lncRNA downstream 609902 21359549 ~ 21361642 (+) False LOC113544125
TU323425 lncRNA downstream 730253 21479900 ~ 21488039 (+) False G272940
TU323426 lncRNA downstream 730253 21479900 ~ 21488039 (+) True G272940
XM_034312564.1 mRNA upstream 38335 20702515 ~ 20711026 (+) True pcyox1
XM_026942866.2 mRNA upstream 51698 20684972 ~ 20697663 (+) True gmcl1
XM_034312907.1 mRNA upstream 78874 20663103 ~ 20670487 (+) True snx24
XM_026942813.2 mRNA upstream 88266 20647809 ~ 20661095 (+) True loxa
XM_026942814.2 mRNA upstream 90736 20647807 ~ 20658625 (+) False loxa
XM_034312698.1 mRNA downstream 526 20750173 ~ 20761668 (+) True stard7
XM_034312699.1 mRNA downstream 528 20750175 ~ 20761668 (+) False stard7
XM_026942488.2 mRNA downstream 94678 20844325 ~ 20864249 (+) True smarcad1b
XM_034312293.1 mRNA downstream 95055 20844702 ~ 20864250 (+) False smarcad1b
XM_026942788.2 mRNA downstream 114918 20864565 ~ 20870543 (+) False ska1
TU322810 other upstream 206407 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 320218 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 350414 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 900535 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 919093 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 726465 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 1619627 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1872781 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 2375720 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 2515806 23265453 ~ 23274170 (+) False rc3h2

Expression Profile