RNA id: TU323226


Basic Information

Item Value
RNA id TU323226
length 3873
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G272770
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20927622 ~ 20931583 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCACGTTTATTTACAGCAGAATCCTGACCGGATGAAGGGGAGCAGGTTAAAGGAGATGAAAACGTTTAGGTACAGCGCGTCAGGATCCATAGGTCACTACACagttcttaatttatttattttttttaaatccacttttATACAGAATCCTTTTGGCCGTAACGCAGATGTGCCAACGGAGCCCAGCGCCCTCTGCTGGCAGGGAGTGAAGAGGGATGggaaaaagtataaaataaaacactaagaaaaatacaaataaggggataaaacaaacaaacaaaaaaaaaaaaacaaaacaaaaaggtggTGAAGCTtgtcataaaaaagaaaaccttttgAAAATGTTCAATGTTCAATCATTCCATGATTTCAGAGTTTCATGTCCATAAGGGGGGCTGGCAGGGGATCAAGAAAGGGATTGTGGGTAAGTCGACATCTGTGATGCTCCGAATGTGCCGTGGTCAGGACAATGTTCTCTGCCTGGCGTCTGTGAGGTCCCTGTCCCTGTCTGAGATACAGGGCCCGAGGCGTCCAAACCCTCCGAGGATCTTTGTAGCCCGAGCACTTGTGTTTATGTTGTTGTGCAATCATACGCTCGTTCGTTCGCTGAAAGCCTGCGTGTGCGCGAGTGTTGCAGTGCTGCCGTGGGCTTCCTGAACGACGACACACTGTACACTTCACATGCAAGGCCAGACAACTCACAGATTTAGAAATAATGAAACGGGTAAcaagtagaaaaaaataaaataaaataaaggagcGGAACTCAAGAAAATCTCGACAGACAAACCAGCAaacctcactgacacacacctgtcactcacacacaccagtcacaCACAATTCCAGTCTCTTAGGGCAAATAATTGTCaagaaaatactaaaataaaggGAGAATTAGAACGCAAGCCACTAGGCATGTGCCAGTTATCACTTTTACAACATATTGTGACAATTTAATGCACAAATTACTGTTATCTTGGATTCTTACTTCAGGGAGATTTGAAAGAGCCGTCTCAAAGAAGGGAATCCCATAATTGGGTTAGGAATTTGTTCGGATAATACTGGCACATGCCTACAAGCCACACCGCTTCTTAACGACAACCGTAATCAGCGCTGAGCCCGTCGACTGTAAGAGCACCATTCTGAACAGACTTAACAGAGGTAATGCCATACATTCAGTTcagtcacacagacacacacacacacacacacacacacacacacacactctttCTCTAGCATACTGAAGCCCCTCTTGAAGCCGTGCCACCCTTTAGTCCCTCCTGCTAGTTACCTGCAgcttaaaggaatagtttggtGAAAAGTTAGTTCTGAAACCATGAAGCCAGTGTAGCGTCGTattagaaatgaaaatgataagtcattaataataataataataataataataataataataataatacgctacaggccatgctgttataggaaaataatccacactgggTGGTGGGATTTTCAATTCATCAATGAGCAGGACGTCATCCTTTTGAACTGTTTGtacttatatttaattatataaaacatctATGAGACaagtaagttcctgttctctcttacgttatagcagctataaacagtcattccctcaccagcttctcttctgaagttaaaaagacaaaaaaacacagcttatgttagagaaaccagaaagcacaaaagtcctctgtcctgaagacttactgattgttacaaaatgctggcactggagactccttccaataaatgttacataaacatctctaTACGGAAATAtgcttttctttattaaataataactttttcttaatccatttattattagatgtGCTTTCACAGCTATTAGTCTGTTTGCTGAATTCAAATCAGAGTGAAATGTGaaacttttggtttgttttgttttctcactgTACGCAACTGAGTAAACCAGATAACAACGGGTGTGTAGcgctgaggaaaaaaagaaaacgtgtAAAgcgctctttctttctttaattggtcagaaatacgGTGCTGAGAAATTAAACAGAACTttactgtgtggtgtgtgtagaaTTCACAAAACATaatctgagcacacacacacacacacacaacagctgcATTCAATATAttactagataattatataaacaactatttgaaaacattttgtgtatcgtCTCTGggatttattttctctttttgttcagtCAAAATCTCCAGAGCACATCGCATTTCCgcagcgctacagctctgtcctttgccATGGTTTGCAACTCATTTTAGCAGTTCAtgtctacagaaaaaaaaacatcaaaaccgCAATTTAAAACTCACTTCCTGCCGTTGGATCGAATCGACCTCGAAGAGTTTGACTGGAAGCAGACAGAAATCACCTCGCTGAGATGGTCTCGGAACCGGactaaagaagaaaacacactaGAGTTCGATTCAGGtggactaaacactgcatatgtgaaagcaccctcaGATTACATGAAGCGTCGATCATACgagtgaatgaactgttactatagaaacgattacatgtcagaacgagtgcattaatataaacctgttactGATTTATTAATCGGCAAGCTTCTGAAGAATTCATCAGTGTGGTGGTATAAAGCAGACTAGGACACGGTGAGACTTAGTGTgatctataaaaatgaacaaaacttgAACACATCATCTTGGGAATCCTGCCCATGGCCTTCCATTATCTCAGaactccaaaaaacaaaacaaaacaaacaaacaaaaaaaaaaagctgcaaacATCAGACCCCAAACATGTCTTTGGGGTGAGAAATCGTCCAAATTTCACCAAACTATTTCTTTAAACGAGGGAACATGGTCGTAAAAAGTGTATATGGTGCGactttcagagaaaaaaaaaaaaactgcatttcccATCAACCTCTCACTACAAATCCACCTAAAAAGCAACAAAGGGAAAAGCACGAAAAAAACcctcactcacacagacacacaattcATATTTGatcacacagacatacacacttGCACCCCAACATGATAACCCTAATACAtgtgtacacatatatacatagagGGGCGTGGCCTTCCCAACGGTAAGGACACACTCCGTTTCATAATGCGTTGTTTCTGTATATGCCAAGAATAAAAtctttctaaataaaatacacatatCTGTAAAGGGGAAAGGGGATGGGCTTataagagaggaggagaggacgcaaaagagagagagagagaagcaggaaAGCGTCTGTGgccttgtgtgtatgtgtgtgtgtgtgtgtgtatgtgtgcgcatgTTGGTCCCCTCAGGGTCATCACTGTCCTAAGCTGAGACTTTCTCAGCGTCTTGTCCGTggttcaaaaaacaaaactaaacaaaaaacaaacaaaaaaaaaaaccccaaaacaaacaaacaaaaaacaaaacacaccaacagTCTGCAAATCCATAATGACGccgattagaaaaaaaataatcacgtGGAGCTCATCGAGCACCAGTTGTGTCCCGTAAAGACAAGTCTATTAAGGAGTGGCCTCTCAGTCCAACAGGGACCAATGggggagatgagagagagaagagagagagagagagagagagagagagagagagaggaaacagaagaGGTAATAAAAAGAGAAGGTGAGTGAATGTGCTGAGCAGAATCCATCTGGCAGTGAAGTCAAGCTGCTCTCCATCTGATCCATGAATAAGGAGATGAGAAGACGTGTGCGACTCCCCCCTCCCATGTTCCTGCTCTccctctccctgtgtgtgttggGGATGAGTTGAAGTGAATGCTGCCCGTCTCGCTCATGGCCATCATACGTCCATGAACCGGGAGCTGCTGGACTTGGCATGGAAAGGCTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322887 lncRNA upstream 177975 20749361 ~ 20749647 (+) True G272470
TU322859 lncRNA upstream 190122 20716511 ~ 20737500 (+) True G272450
TU322857 lncRNA upstream 202428 20659603 ~ 20725194 (+) True G272448
TU322835 lncRNA upstream 267328 20565033 ~ 20660294 (+) True G272427
TU322832 lncRNA upstream 363558 20562176 ~ 20564064 (+) True G272426
TU323264 lncRNA downstream 58760 20990343 ~ 20990551 (+) True G272803
TU323409 lncRNA downstream 427966 21359549 ~ 21361642 (+) False LOC113544125
TU323425 lncRNA downstream 548317 21479900 ~ 21488039 (+) False G272940
TU323426 lncRNA downstream 548317 21479900 ~ 21488039 (+) True G272940
TU323428 lncRNA downstream 553568 21485151 ~ 21492672 (+) False G272940
XM_026942675.2 mRNA upstream 26355 20884027 ~ 20901267 (+) True nt5c2l1
XM_026942450.2 mRNA upstream 47453 20871377 ~ 20880169 (+) True slc2a11l
XM_026942788.2 mRNA upstream 57079 20864565 ~ 20870543 (+) False ska1
XM_026942787.2 mRNA upstream 57079 20864717 ~ 20870543 (+) True ska1
XM_034312293.1 mRNA upstream 63372 20844702 ~ 20864250 (+) False smarcad1b
XM_026942605.2 mRNA downstream 28479 20960062 ~ 21049972 (+) False gnaz
XM_026942606.2 mRNA downstream 66055 20997638 ~ 21049972 (+) True gnaz
XM_026942602.2 mRNA downstream 66055 20997638 ~ 21049972 (+) False gnaz
XM_026942607.2 mRNA downstream 83102 21014685 ~ 21049972 (+) False gnaz
XM_026942608.2 mRNA downstream 86203 21017786 ~ 21049972 (+) False gnaz
TU322810 other upstream 384668 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 498479 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 528675 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 1078796 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 1097354 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 544529 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 1437691 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1690845 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 2193784 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 2333870 23265453 ~ 23274170 (+) False rc3h2

Expression Profile