RNA id: TU323264


Basic Information

Item Value
RNA id TU323264
length 209
lncRNA type intronic
GC content 0.42
exon number 1
gene id G272803
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20990343 ~ 20990551 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttagggtcattgtcatgctggaaagtCCAAGAGCATCCGTGCAGAAGAATGCAAATTTGGATATCTTTTTGTATCCTTTTCCATCTTTATAAAGTTCCACTACCTTGTTACACAGGTATTTTGACAGTTCTTTTCTGCTCCCCATGGCTCAGTATCTACCCTGCTCAGGGCATCCATGTGAGAGCTAACAAACTAGACACTAATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323226 lncRNA upstream 58760 20927622 ~ 20931583 (+) True G272770
TU322887 lncRNA upstream 240696 20749361 ~ 20749647 (+) True G272470
TU322859 lncRNA upstream 252843 20716511 ~ 20737500 (+) True G272450
TU322857 lncRNA upstream 265149 20659603 ~ 20725194 (+) True G272448
TU322835 lncRNA upstream 330049 20565033 ~ 20660294 (+) True G272427
TU323409 lncRNA downstream 368998 21359549 ~ 21361642 (+) False LOC113544125
TU323425 lncRNA downstream 489349 21479900 ~ 21488039 (+) False G272940
TU323426 lncRNA downstream 489349 21479900 ~ 21488039 (+) True G272940
TU323428 lncRNA downstream 494600 21485151 ~ 21492672 (+) False G272940
XR_003404485.2 lncRNA downstream 497561 21488112 ~ 21492076 (+) True LOC113544190
XM_026942675.2 mRNA upstream 89076 20884027 ~ 20901267 (+) True nt5c2l1
XM_026942450.2 mRNA upstream 110174 20871377 ~ 20880169 (+) True slc2a11l
XM_026942788.2 mRNA upstream 119800 20864565 ~ 20870543 (+) False ska1
XM_026942787.2 mRNA upstream 119800 20864717 ~ 20870543 (+) True ska1
XM_034312293.1 mRNA upstream 126093 20844702 ~ 20864250 (+) False smarcad1b
XM_026942606.2 mRNA downstream 7087 20997638 ~ 21049972 (+) True gnaz
XM_026942602.2 mRNA downstream 7087 20997638 ~ 21049972 (+) False gnaz
XM_026942607.2 mRNA downstream 24134 21014685 ~ 21049972 (+) False gnaz
XM_026942608.2 mRNA downstream 27235 21017786 ~ 21049972 (+) False gnaz
XM_026942768.2 mRNA downstream 72134 21062685 ~ 21074114 (+) True rab36
TU322810 other upstream 447389 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 561200 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 591396 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 1141517 19848755 ~ 19848826 (+) True trnae-cuc_36
XR_004579782.1 other upstream 1160075 19825962 ~ 19830268 (+) False LOC117599326
TU323423 other downstream 485561 21476112 ~ 21478880 (+) True LOC113543995
TU323909 other downstream 1378723 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1631877 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 2134816 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 2274902 23265453 ~ 23274170 (+) False rc3h2

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU7622 True 11012 lncRNA 0.45 3 CM030121.1 36526668 ~ 36539067 (+)
mexican tetra (Astyanax mexicanus) TU7622 True 360 lncRNA 0.39 5 NC_035897.1 22949827 ~ 22951675 (+)