RNA id: TU323425


Basic Information

Item Value
RNA id TU323425
length 2199
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G272940
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21479900 ~ 21492672 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGGGAAGGCTTGGCAAGAGAGACTGAGGGACTGGCAGCAGTTTGTGGGATAGGGGAGAACTGTGTAGATGTGGGAAATGCTGGGGAATGCACATTATTCTGGGACATGGCAGAAGTTCCAGCACTTTGGTTcagaaatggcaaaatattgttGACTGTTTGGGTATCAGAGCTCAGAGATGGAGAAATTGCTGTATTCAGTAGCCAAGTGCGGAATCCAGAAGGATTTATCATATGCCATTTTGCAGCCTGATAGGTGCCCTGCACCCGAGATGTAGAAGCAGAGTGACCCACCAAAGCTTGTGTTGTGGTGTTAGGCTGAAATGTCTGGTTCTGGAATCCAGAGATTTGGTTTGTGGTGACCACAGACTGGGAGGAGGATGGAATGCTCTGATCCTGTGAAGTCATATTTCTGCCAGAGGTTGGGCCTTGATACAATGTTGAAGCACCAGAGGACTGAGCCTGTGACATAGAAGCAGAAATGCCTGTAGAAACCTGTGCTGTAGAGCTAGGCTGGTATAATGACTGGGTCTGGAATCCATACACTTGGGAAGAGGATGGAATATTCTGACCCCATAAAATGTTGTACCATTTAGCAGGTCTTGAAGATTCAGCCCCATAGCTGCCCTGAGCCTGAAATGAAGATGAAGACTGGCTTTCCACAACCTGTGTTGTGAGACTAGGCTGGTATGAATGGCTCTGGAATCCAGAGATCTGTTCTGTGTTGACTGCAGTGTGGGATGAAGACAGCATTCTCCGATTCTGTGAAGTTAGATAACTGCCAGAGGGTAGACCTGTATACAATGTTGAAGCACCTGAGGATTGAGCTTGCGGGGTAGATGCAGACTGGCCTGCCAAAACCGGTGTTGTGGAGCTAGGCCGGTATAAAGACTGGCTCTGGAATCCAGAGATTTGGTTTGTGGTGACCACAGATTGGGAGGAGGATGGAATGCTCTGACCCTGTGAAGTCAGATACCCACCAAAGGATAGACCTTGATACAATGAAGCACCTGAGGCCTGAGCCTGAGGGGTAGAAGCAGACTGGCCTGCCAAAACCTGTGTTGCAGAGCTAGGCTGGTATGATGACTGAGTCTGGAATCCAGAGATTTGGTTTGTGGTGATTGCAGACTGAGAAGAGGATGGAATTGTCTGACCCTGTAAAATGCTATACCATTTAGCATGTCCTGAGGATTCACCCCCATAGCTGCCCTGAGCCTGAGATGTAGAAGCAGACTGGCTTGCCGAAACCTGTGCTGTGGTGCCAGGCTGGTATAATGGCTGGGTCTGGGATCCAGATACCTGGTTTATGTTGGCTACAGACTGGGAGTAAGGTATAATTCTCCAGTCCTGTGAAATGTTGTACCCGCTGGAGGCTTGCCCTTGGTACAATGTTGATTCACCTGAGGACTGAGCCAGAGATGTAGCAGACTGGCCAGTCAAAACCTGTGTTGTGGAGCTTGGCTGGTATAATGATTGGGTCTGGGATCCAGATACCTGGTTTGTGGTACCTGCAGACTGGGAAGAGGATGGTCTCTGGAATCCAGGGGCATACTGAGCTTTTACAGGCCAAGATTGAGATAGCGAAGGGCCACAGTTATTAGGCTTGAGAGACTCGTACCAATAAACTCTTGAAGACTGAGCTGTGTAGTTATTCTGGCGTTGAATGGTAGGAGCAGCTTGACTATGAGCATTTAGTACAGGTTTACCATGAGCAGCACCACCAGAAGACTGCACAAAACTAGAATCATGTTGAGCAGTTTGGACCTCAGAAGTAAGCATAACACTACTAGaatttcctcctcctcctccaacaTTTCCATTTGCACCTTTTCTGGACAGTAGCTGAAAAGGTTGAACAGGTGTAGCAAGATGAAAATTTTGGTTCCCTGTGACATTAGAATGTCCAGCTTGCCAATCAATGATAGATGTTCTATTCCACACTGAATCCATTTATATGTCCACAAAGAACCAAAGCAATGGAAAGTAGTTGGagtctgaaagaaaaaaaaaacaaatcccaTACTCAAAAttgtgtggagaaaaaaaaacagggaaacaCTAAATGCATACCTCTTCATTGCCCATGACATCTCAAAATATGATTAACAGAAGGGGCCCTGACTACTAAAATGTATATGGTACACTATGCCCAAATACTAAAACCAGCACCAACCTAAAAACGCTACTTATATAACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323409 lncRNA upstream 118258 21359549 ~ 21361642 (+) False LOC113544125
TU323264 lncRNA upstream 489349 20990343 ~ 20990551 (+) True G272803
TU323226 lncRNA upstream 548317 20927622 ~ 20931583 (+) True G272770
TU322887 lncRNA upstream 730253 20749361 ~ 20749647 (+) True G272470
TU322859 lncRNA upstream 742400 20716511 ~ 20737500 (+) True G272450
XR_003404485.2 lncRNA downstream 73 21488112 ~ 21492076 (+) True LOC113544190
TU323800 lncRNA downstream 474625 21962664 ~ 21962867 (+) True G273248
TU323810 lncRNA downstream 493940 21981979 ~ 21982191 (+) True G273258
TU323780 lncRNA downstream 542561 22030600 ~ 22031526 (+) False LOC113544129
TU323778 lncRNA downstream 549800 22037839 ~ 22038149 (+) True G273226
XM_026942559.2 mRNA upstream 1337 21476087 ~ 21478563 (+) False LOC113543995
XM_026942513.2 mRNA upstream 6782 21468412 ~ 21473118 (+) True LOC113543961
XM_026910063.2 mRNA upstream 13757 21462543 ~ 21466143 (+) True LOC113523962
XM_026942860.2 mRNA upstream 27827 21447235 ~ 21452073 (+) True LOC113544185
XM_026942859.2 mRNA upstream 30665 21447235 ~ 21449235 (+) False LOC113544185
XM_026942779.2 mRNA downstream 434512 21922551 ~ 22033997 (+) True LOC113544129
XM_034312836.1 mRNA downstream 784027 22272066 ~ 22289033 (+) True ppp2r2ab
XM_026942658.2 mRNA downstream 803042 22291081 ~ 22310553 (+) True bnip3lb
XM_026942647.2 mRNA downstream 827255 22315294 ~ 22351716 (+) True dpysl2b
XM_026942648.2 mRNA downstream 833050 22321089 ~ 22351716 (+) False dpysl2b
TU323423 other upstream 1020 21476112 ~ 21478880 (+) True LOC113543995
TU322810 other upstream 936946 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 1050757 20423399 ~ 20429143 (+) True G272374
TU322750 other upstream 1080953 20398280 ~ 20398947 (+) True G272367
trnae-cuc_36 other upstream 1631074 19848755 ~ 19848826 (+) True trnae-cuc_36
TU323909 other downstream 881235 22369274 ~ 22374875 (+) False tmem230a
XR_003404475.2 other downstream 1134389 22622428 ~ 22665570 (+) True lrrtm4l1
TU324289 other downstream 1637328 23125367 ~ 23129320 (+) False lhx6
TU324492 other downstream 1777414 23265453 ~ 23274170 (+) False rc3h2
TU324491 other downstream 1833532 23321571 ~ 23360503 (+) False LOC113543986

Expression Profile