Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU323778 |
| length | 311 |
| lncRNA type | inter_gene |
| GC content | 0.28 |
| exon number | 1 |
| gene id | G273226 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 22037839 ~ 22038149 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0071805 | potassium ion transmembrane transport | biological_process |
| GO:0015672 | monovalent inorganic cation transport | biological_process |
| GO:0030001 | metal ion transport | biological_process |
| GO:0006812 | cation transport | biological_process |
| GO:0006813 | potassium ion transport | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU323780 | lncRNA | upstream | 6313 | 22030600 ~ 22031526 (+) | False | LOC113544129 |
| TU323810 | lncRNA | upstream | 55648 | 21981979 ~ 21982191 (+) | True | G273258 |
| TU323800 | lncRNA | upstream | 74972 | 21962664 ~ 21962867 (+) | True | G273248 |
| TU323428 | lncRNA | upstream | 545167 | 21485151 ~ 21492672 (+) | False | G272940 |
| XR_003404485.2 | lncRNA | upstream | 545763 | 21488112 ~ 21492076 (+) | True | LOC113544190 |
| TU324041 | lncRNA | downstream | 523955 | 22562104 ~ 22562325 (+) | True | G273473 |
| TU324179 | lncRNA | downstream | 762932 | 22801081 ~ 22840120 (+) | True | G273600 |
| XR_004579839.1 | lncRNA | downstream | 954393 | 22992542 ~ 22994797 (+) | True | LOC117599377 |
| TU324282 | lncRNA | downstream | 954407 | 22992556 ~ 22994510 (+) | False | LOC117599377 |
| TU324287 | lncRNA | downstream | 999260 | 23037409 ~ 23038616 (+) | True | G273683 |
| XM_026942779.2 | mRNA | upstream | 3842 | 21922551 ~ 22033997 (+) | True | LOC113544129 |
| XM_026942559.2 | mRNA | upstream | 559276 | 21476087 ~ 21478563 (+) | False | LOC113543995 |
| XM_026942513.2 | mRNA | upstream | 564721 | 21468412 ~ 21473118 (+) | True | LOC113543961 |
| XM_026910063.2 | mRNA | upstream | 571696 | 21462543 ~ 21466143 (+) | True | LOC113523962 |
| XM_026942860.2 | mRNA | upstream | 585766 | 21447235 ~ 21452073 (+) | True | LOC113544185 |
| XM_034312836.1 | mRNA | downstream | 233917 | 22272066 ~ 22289033 (+) | True | ppp2r2ab |
| XM_026942658.2 | mRNA | downstream | 252932 | 22291081 ~ 22310553 (+) | True | bnip3lb |
| XM_026942647.2 | mRNA | downstream | 277145 | 22315294 ~ 22351716 (+) | True | dpysl2b |
| XM_026942648.2 | mRNA | downstream | 282940 | 22321089 ~ 22351716 (+) | False | dpysl2b |
| XM_026942855.2 | mRNA | downstream | 331107 | 22369256 ~ 22374870 (+) | True | tmem230a |
| TU323423 | other | upstream | 558959 | 21476112 ~ 21478880 (+) | True | LOC113543995 |
| TU322810 | other | upstream | 1494885 | 20540325 ~ 20542954 (+) | True | G272408 |
| TU322768 | other | upstream | 1608696 | 20423399 ~ 20429143 (+) | True | G272374 |
| TU322750 | other | upstream | 1638892 | 20398280 ~ 20398947 (+) | True | G272367 |
| trnae-cuc_36 | other | upstream | 2189013 | 19848755 ~ 19848826 (+) | True | trnae-cuc_36 |
| TU323909 | other | downstream | 331125 | 22369274 ~ 22374875 (+) | False | tmem230a |
| XR_003404475.2 | other | downstream | 584279 | 22622428 ~ 22665570 (+) | True | lrrtm4l1 |
| TU324289 | other | downstream | 1087218 | 23125367 ~ 23129320 (+) | False | lhx6 |
| TU324492 | other | downstream | 1227304 | 23265453 ~ 23274170 (+) | False | rc3h2 |
| TU324491 | other | downstream | 1283422 | 23321571 ~ 23360503 (+) | False | LOC113543986 |
