Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU323780 |
| length | 927 |
| lncRNA type | sense_over |
| GC content | 0.43 |
| exon number | 1 |
| gene id | LOC113544129 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 21922551 ~ 22033997 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU323810 | lncRNA | upstream | 48409 | 21981979 ~ 21982191 (+) | True | G273258 |
| TU323800 | lncRNA | upstream | 67733 | 21962664 ~ 21962867 (+) | True | G273248 |
| TU323428 | lncRNA | upstream | 537928 | 21485151 ~ 21492672 (+) | False | G272940 |
| XR_003404485.2 | lncRNA | upstream | 538524 | 21488112 ~ 21492076 (+) | True | LOC113544190 |
| TU323425 | lncRNA | upstream | 542561 | 21479900 ~ 21488039 (+) | False | G272940 |
| TU323778 | lncRNA | downstream | 6313 | 22037839 ~ 22038149 (+) | True | G273226 |
| TU324041 | lncRNA | downstream | 530578 | 22562104 ~ 22562325 (+) | True | G273473 |
| TU324179 | lncRNA | downstream | 769555 | 22801081 ~ 22840120 (+) | True | G273600 |
| XR_004579839.1 | lncRNA | downstream | 961016 | 22992542 ~ 22994797 (+) | True | LOC117599377 |
| TU324282 | lncRNA | downstream | 961030 | 22992556 ~ 22994510 (+) | False | LOC117599377 |
| XM_026942559.2 | mRNA | upstream | 552037 | 21476087 ~ 21478563 (+) | False | LOC113543995 |
| XM_026942513.2 | mRNA | upstream | 557482 | 21468412 ~ 21473118 (+) | True | LOC113543961 |
| XM_026910063.2 | mRNA | upstream | 564457 | 21462543 ~ 21466143 (+) | True | LOC113523962 |
| XM_026942860.2 | mRNA | upstream | 578527 | 21447235 ~ 21452073 (+) | True | LOC113544185 |
| XM_034312836.1 | mRNA | downstream | 240540 | 22272066 ~ 22289033 (+) | True | ppp2r2ab |
| XM_026942658.2 | mRNA | downstream | 259555 | 22291081 ~ 22310553 (+) | True | bnip3lb |
| XM_026942647.2 | mRNA | downstream | 283768 | 22315294 ~ 22351716 (+) | True | dpysl2b |
| XM_026942648.2 | mRNA | downstream | 289563 | 22321089 ~ 22351716 (+) | False | dpysl2b |
| XM_026942855.2 | mRNA | downstream | 337730 | 22369256 ~ 22374870 (+) | True | tmem230a |
| TU323423 | other | upstream | 551720 | 21476112 ~ 21478880 (+) | True | LOC113543995 |
| TU322810 | other | upstream | 1487646 | 20540325 ~ 20542954 (+) | True | G272408 |
| TU322768 | other | upstream | 1601457 | 20423399 ~ 20429143 (+) | True | G272374 |
| TU322750 | other | upstream | 1631653 | 20398280 ~ 20398947 (+) | True | G272367 |
| trnae-cuc_36 | other | upstream | 2181774 | 19848755 ~ 19848826 (+) | True | trnae-cuc_36 |
| TU323909 | other | downstream | 337748 | 22369274 ~ 22374875 (+) | False | tmem230a |
| XR_003404475.2 | other | downstream | 590902 | 22622428 ~ 22665570 (+) | True | lrrtm4l1 |
| TU324289 | other | downstream | 1093841 | 23125367 ~ 23129320 (+) | False | lhx6 |
| TU324492 | other | downstream | 1233927 | 23265453 ~ 23274170 (+) | False | rc3h2 |
| TU324491 | other | downstream | 1290045 | 23321571 ~ 23360503 (+) | False | LOC113543986 |
