Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579839.1 |
| length | 841 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 2 |
| gene id | LOC117599377 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 22992542 ~ 22994797 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU324179 | lncRNA | upstream | 152422 | 22801081 ~ 22840120 (+) | True | G273600 |
| TU324041 | lncRNA | upstream | 430217 | 22562104 ~ 22562325 (+) | True | G273473 |
| TU323778 | lncRNA | upstream | 954393 | 22037839 ~ 22038149 (+) | True | G273226 |
| TU323780 | lncRNA | upstream | 961016 | 22030600 ~ 22031526 (+) | False | LOC113544129 |
| TU323810 | lncRNA | upstream | 1010351 | 21981979 ~ 21982191 (+) | True | G273258 |
| TU324287 | lncRNA | downstream | 42612 | 23037409 ~ 23038616 (+) | True | G273683 |
| TU324237 | lncRNA | downstream | 53124 | 23047921 ~ 23062345 (+) | True | G273644 |
| TU324290 | lncRNA | downstream | 55015 | 23049812 ~ 23126603 (+) | False | lhx6 |
| XR_004579810.1 | lncRNA | downstream | 74140 | 23068937 ~ 23073938 (+) | True | LOC117599346 |
| TU324327 | lncRNA | downstream | 140782 | 23135579 ~ 23135832 (+) | True | G273719 |
| XM_026942550.2 | mRNA | upstream | 34941 | 22948893 ~ 22957601 (+) | True | snx18b |
| XM_026942775.2 | mRNA | upstream | 128712 | 22852481 ~ 22863830 (+) | True | fstb |
| XM_034312574.1 | mRNA | upstream | 154924 | 22792578 ~ 22837618 (+) | True | itga2.2 |
| XM_026942834.2 | mRNA | upstream | 212255 | 22767226 ~ 22780287 (+) | True | atp6v1b2 |
| XM_034312793.1 | mRNA | upstream | 226267 | 22706961 ~ 22766275 (+) | False | vsig8a |
| XM_026942841.2 | mRNA | downstream | 10207 | 23005004 ~ 23015228 (+) | False | rasgef1bb |
| XM_026942840.2 | mRNA | downstream | 10208 | 23005005 ~ 23016226 (+) | True | rasgef1bb |
| XM_026942766.2 | mRNA | downstream | 25131 | 23019928 ~ 23039549 (+) | True | antxr2b |
| XM_026942730.2 | mRNA | downstream | 45669 | 23040466 ~ 23045078 (+) | True | paqr3b |
| XM_026942706.2 | mRNA | downstream | 109880 | 23104677 ~ 23121707 (+) | True | rbm18 |
| XR_003404475.2 | other | upstream | 326972 | 22622428 ~ 22665570 (+) | True | lrrtm4l1 |
| TU323909 | other | upstream | 617667 | 22369274 ~ 22374875 (+) | False | tmem230a |
| TU323423 | other | upstream | 1513662 | 21476112 ~ 21478880 (+) | True | LOC113543995 |
| TU322810 | other | upstream | 2449588 | 20540325 ~ 20542954 (+) | True | G272408 |
| TU322768 | other | upstream | 2563399 | 20423399 ~ 20429143 (+) | True | G272374 |
| TU324289 | other | downstream | 130570 | 23125367 ~ 23129320 (+) | False | lhx6 |
| TU324492 | other | downstream | 270656 | 23265453 ~ 23274170 (+) | False | rc3h2 |
| TU324491 | other | downstream | 326774 | 23321571 ~ 23360503 (+) | False | LOC113543986 |
| TU324879 | other | downstream | 1108292 | 24103089 ~ 24104595 (+) | False | hsdl2 |
| TU325154 | other | downstream | 1232584 | 24227381 ~ 24228678 (+) | False | LOC117599389 |
