Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU324289 |
| length | 783 |
| RNA type | TUCP |
| GC content | 0.54 |
| exon number | 2 |
| gene id | lhx6 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 23049812 ~ 23145567 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579810.1 | lncRNA | upstream | 51429 | 23068937 ~ 23073938 (+) | True | LOC117599346 |
| TU324237 | lncRNA | upstream | 63022 | 23047921 ~ 23062345 (+) | True | G273644 |
| TU324287 | lncRNA | upstream | 86751 | 23037409 ~ 23038616 (+) | True | G273683 |
| XR_004579839.1 | lncRNA | upstream | 130570 | 22992542 ~ 22994797 (+) | True | LOC117599377 |
| TU324282 | lncRNA | upstream | 130857 | 22992556 ~ 22994510 (+) | False | LOC117599377 |
| TU324327 | lncRNA | downstream | 6259 | 23135579 ~ 23135832 (+) | True | G273719 |
| TU324488 | lncRNA | downstream | 131726 | 23261046 ~ 23279789 (+) | False | G273865 |
| TU324489 | lncRNA | downstream | 140828 | 23270148 ~ 23279789 (+) | True | G273865 |
| TU324487 | lncRNA | downstream | 145502 | 23274822 ~ 23277850 (+) | False | G273865 |
| TU324506 | lncRNA | downstream | 156680 | 23286000 ~ 23333549 (+) | True | G273880 |
| XM_026942706.2 | mRNA | upstream | 3660 | 23104677 ~ 23121707 (+) | True | rbm18 |
| XM_026942730.2 | mRNA | upstream | 80289 | 23040466 ~ 23045078 (+) | True | paqr3b |
| XM_026942766.2 | mRNA | upstream | 85818 | 23019928 ~ 23039549 (+) | True | antxr2b |
| XM_026942840.2 | mRNA | upstream | 109141 | 23005005 ~ 23016226 (+) | True | rasgef1bb |
| XM_026942841.2 | mRNA | upstream | 110139 | 23005004 ~ 23015228 (+) | False | rasgef1bb |
| XM_026942850.2 | mRNA | downstream | 34389 | 23163709 ~ 23169517 (+) | True | ndufa8 |
| XM_026942477.2 | mRNA | downstream | 90825 | 23220145 ~ 23232035 (+) | True | si:ch211-243g18.2 |
| XM_034312934.1 | mRNA | downstream | 115240 | 23244560 ~ 23274653 (+) | True | rc3h2 |
| XM_034312933.1 | mRNA | downstream | 118236 | 23247556 ~ 23274653 (+) | False | rc3h2 |
| XM_034312932.1 | mRNA | downstream | 121664 | 23250984 ~ 23274653 (+) | False | rc3h2 |
| XR_003404475.2 | other | upstream | 459797 | 22622428 ~ 22665570 (+) | True | lrrtm4l1 |
| TU323909 | other | upstream | 750492 | 22369274 ~ 22374875 (+) | False | tmem230a |
| TU323423 | other | upstream | 1646487 | 21476112 ~ 21478880 (+) | True | LOC113543995 |
| TU322810 | other | upstream | 2582413 | 20540325 ~ 20542954 (+) | True | G272408 |
| TU322768 | other | upstream | 2696224 | 20423399 ~ 20429143 (+) | True | G272374 |
| TU324492 | other | downstream | 136133 | 23265453 ~ 23274170 (+) | False | rc3h2 |
| TU324491 | other | downstream | 192251 | 23321571 ~ 23360503 (+) | False | LOC113543986 |
| TU324879 | other | downstream | 973769 | 24103089 ~ 24104595 (+) | False | hsdl2 |
| TU325154 | other | downstream | 1098061 | 24227381 ~ 24228678 (+) | False | LOC117599389 |
| TU325389 | other | downstream | 1400658 | 24529978 ~ 24587552 (+) | False | erbin |
