RNA id: XM_026942809.2


Basic Information

Item Value
RNA id XM_026942809.2
length 1680
RNA type mRNA
GC content 0.57
exon number 8
gene id lhx6
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23049812 ~ 23145567 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAGCAGGCGAGCTGAGCGCGCGCCCGGACTTGAGCGACTTTACACAACTTTGTGAAGCAGAAATCAGCGGATTTGAGGCGAGGATCTTATGGGAGAGAGCTCCACGAAGCGCTCACTCACGCACGAAGGACGTCCGACAGTGCACTCACGTCTGTTTTTCACGCATTTCTTTCATGTATTGGAAAAATGAGATTCTGGCCCCTCTGTCAGAGGGAAATCGATTTTTATCCGAAGGAATTAACTCAAAGCAGTCCCACTCCGACGGCGAGTCTCAGAGGTCGGTGATGGAGAAAGAGGAGCCGCGCTGCTCGCCCAGTCCTCCGTCCACACCGTCCATCTGCTCGCCCACATCCAGCGCCTCCGCCTCGTCCGTCCCCTCCACCGGCAAGAACGTGTGCGCGAGCTGCGGCCTCGAGATCCTCGACAGGTACCTGCTCAAGGTGAATAATCTGATGTGGCACGTGCGCTGTCTGGAGTGCTCAGTGTGCAGGACTTCACTGCGCCAACACAGCAGCTGCTACATCAAAAACAAGGAGATCTTCTGCAAAATGGATTATTTCAGTAGGTTTGGTACTAAGTGTGCCCGCTGTGGGCGCCAGATCTACGCCAGCGACTGGGTGAGGCGAGCTCGCGGTAACGCTTACCACCTGGCCTGCTTCGCCTGCTTCTCCTGCAAACGGCAGCTTTCCACCGGAGAGGAGTTCGGCCTGGTGGAGGAGAAGGTGCTGTGCAGGATCCACTACGACACCATGGTGGAGAACCTGAAGCGGGCTGCTGAGAGcgGAAGTGGCCTCACGCTGGAAGGAGCCGTGCCGTCGGAGCAGGACAGTCAGCCCAAACCGGCTAAACGTGCTCGCACCTCCTTCACCGCTGAGCAGCTGCAGGTGATGCAGGCTCAGTTTGCGCAGGATAACAACCCTGACGCTCAGACGCTGCAGAAGCTCGCAGACATGACGGGGCTGAGCAGACGAGTCATACAGGTTTGGTTTCAGAACTGTCGAGCGAGACACAAAAAGCACACGCCACAGCACGGCGGCCCTCCGCAGGCCCACCCGCAGGCGCGCATGCCCCCCTCGTTGCCTGACGAGCTGCATTACTCGCCCTTCGGCAGCCCAGAGAGAGCGCGCATGGTGGCTCTGCGCGGCTACATCGACAgTCATCCGTTCTCGGTGCTGACCACACAGAGTCTCCCCCACCAGGCCATGTCCCTGCCACAGCTGCCCCTCAGCCGCTAACGACCCCACCACATTGACCCCTGACCCCTCAACCCTGACCTCCCGCTCCTGACTTCCGTCTGCTCTTCAGAGGTCGCCTCTGGCTGAAGGACAGGGTCACCGTCCCCGCATGCTCTTGACCTCCGACCTCACGAGGAGAGGGGGCGTTTCCTCCTGCCTTTCAGTGGACAGGATTTTCCTCACCTGCAGGCGAGTCTCACACACCTGTGAGCCGTTAGCGTCGGCCCGGAACCTCGTTATCAAGAACCGAGACCAGGATTTGGACCTCTAATGCGCACACTGAAGAGTGGTTTGAGTTTGACTGCTCAAAACATTCGGAGAACATTCATGGTCCTTACTGCAGGATTAAAACACAGTAAAGACGTGAGACCTGTGGAGTGAGACGAGGAACGTAGCAAGAAGTTTCATCTCTCGCTCTGagaaaaaattgtaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579810.1 lncRNA upstream 51414 23068937 ~ 23073938 (+) True LOC117599346
TU324237 lncRNA upstream 63007 23047921 ~ 23062345 (+) True G273644
TU324287 lncRNA upstream 86736 23037409 ~ 23038616 (+) True G273683
XR_004579839.1 lncRNA upstream 130555 22992542 ~ 22994797 (+) True LOC117599377
TU324488 lncRNA downstream 115479 23261046 ~ 23279789 (+) False G273865
TU324489 lncRNA downstream 124581 23270148 ~ 23279789 (+) True G273865
TU324487 lncRNA downstream 129255 23274822 ~ 23277850 (+) False G273865
TU324506 lncRNA downstream 140433 23286000 ~ 23333549 (+) True G273880
TU324528 lncRNA downstream 251241 23396808 ~ 23398531 (+) True G273900
XM_026942706.2 mRNA upstream 3645 23104677 ~ 23121707 (+) True rbm18
XM_026942730.2 mRNA upstream 80274 23040466 ~ 23045078 (+) True paqr3b
XM_026942766.2 mRNA upstream 85803 23019928 ~ 23039549 (+) True antxr2b
XM_026942840.2 mRNA upstream 109126 23005005 ~ 23016226 (+) True rasgef1bb
XM_026942841.2 mRNA upstream 110124 23005004 ~ 23015228 (+) False rasgef1bb
XM_026942850.2 mRNA downstream 18142 23163709 ~ 23169517 (+) True ndufa8
XM_026942477.2 mRNA downstream 74578 23220145 ~ 23232035 (+) True si:ch211-243g18.2
XM_034312934.1 mRNA downstream 98993 23244560 ~ 23274653 (+) True rc3h2
XM_034312933.1 mRNA downstream 101989 23247556 ~ 23274653 (+) False rc3h2
XM_034312932.1 mRNA downstream 105417 23250984 ~ 23274653 (+) False rc3h2
XR_003404475.2 other upstream 459782 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 750477 22369274 ~ 22374875 (+) False tmem230a
TU323423 other upstream 1646472 21476112 ~ 21478880 (+) True LOC113543995
TU322810 other upstream 2582398 20540325 ~ 20542954 (+) True G272408
TU322768 other upstream 2696209 20423399 ~ 20429143 (+) True G272374
TU324492 other downstream 119886 23265453 ~ 23274170 (+) False rc3h2
TU324491 other downstream 176004 23321571 ~ 23360503 (+) False LOC113543986
TU324879 other downstream 957522 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 1081814 24227381 ~ 24228678 (+) False LOC117599389
TU325389 other downstream 1384411 24529978 ~ 24587552 (+) False erbin

Expression Profile