RNA id: TU324487


Basic Information

Item Value
RNA id TU324487
length 3006
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G273865
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23261046 ~ 23279789 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtggtaacgGTGTCCTATTCATTTAAAGGAACAGCAAACCTCCATTTATAAATTTCTCACATTCAGCTCTACAGTGAAGtttagttcatgtttatagaaGACAGGAAGTCTCGCTGTGTCCTAAACCGCATCGGCACGTGAAAAAGACGCCGATTTTCACTAAAGACAGACTTGTTAGCGTAATTAGTGTAGGTGTGACACACCGAACGTGTCGACTTCATTTGGTGTGAGTGGGGAAAAATGTTCTTGATTGATCTTTTGAGAATTTCGGCGTCTTGTGCTTGAACTTTGAAGTGTTGCTTTTGATGGAGTTGTTGAAACGAGTGTTTAAGGTGTTAGCAAAACGCAGCACTTCTCCTACagtctggtttatacttctgcattGAAGCGTATTTGTGTCGCAACACGGAGACGCACTTCCACGCGCCACACCGATTAACAGGTGCGCAGTCCTCTTAAATCCTAACAgctaatcgtgtgtgtgtgtctatggagCTGTGTGTTAAGCCAGCCTTCAAACGAACGCTGATTGGTTGAGGCGAGGAGGTGTGTCCGGTTGTGATAAATCTGCAAAATTGACATCTATCAAATaagatatgagagagagagatgttgagATACAGCTCGTCTCTAGATGTTagaggtgtaacgatacacaGAATTCAAATTCGATACGATTTCCATGCAGTGGCGTTTCAAACACGatgcattttcaaaaataagCGTTGGCTGAGAAATGTGCTTTAGGTTTCTGTTTTCAGTTGGTTAAATTGAATCGTAAGTAACAATGACTGTATCTGTTCAGACTCGTAGCAGtgtataacaaaataaatttaagcatggctaattaaacattagctctCTGGCCAAGCTTTCAGTGGTGTGACTCTAAAGGGGGCGtgtctgaagtgtttaatttttttattctgctgttATCTATCTGTCGGTTACGCAGCTCTCTGTAGCCctggatgtgtttttgaatgcTGCGTTCTCCGCTTTACTGACTAGAGTCTCATACCTGCAGCTATGAACAGGGCGTGCTGCTTCCTGTTTTCGTCTAGTTCCGTGCAGAAGCGTGGACGCGTGCGCGGTTTTAGAGTCTGTGTAACATTTTCAGTCCACCACTCGCTAGCCGTCAGCGTCGCAGCTTAACGGGAAGCTGATGTGCTTCCTTATACCTGACTGGAAAGAGCGCACACACCAGTATGCTAGCGTAATGCATGCTCATGAAACACGGTGCACTTCTTagctgaaatgttttgtttgtttgtttgtgtttcgaAATTCCAGATATGAGGTAATGAGTGTAAGCTTGATTTAAGCTGAAATGTTTTAGACCTCTCATGATAGAAGCAGTGTGTTATAACGACTTTATTATGCAGCCTGttaaatgtattcagtgtacAAATGTATCGAATCGAAAGCCTCCTATTGAGCGATACGATGTGATGCACGGTATCGTTACACCTCTACTGTATACAAAATAGTATATAAAACTTAATGTTTCAGTTGATGTCAGTTAGCTGAAGTGCTAATAAAGGTCAAAGTTTGAGACATAGACTGCGTTTCAGGGAcgcagtgggcggggcttgttgTATTCTATCGTTATACTTTATGCATTCTATTTAGTGCGGCTCTCTCGTTTCCGGTTCTTTTGCTACACTCGCAATGATGTTTTTTACAGTGTGTCTCGGTAAACGCTCCAGAGATAAACATCAGAGATGTATCTTAGCAAACCTTGTGAGATGTCTCTGAGCtgtgaagctttggaagcttaAAGAGCTGTGAAAGTTTTGAAGACGCAGTGCTCAGAATTTGTTGTTGAAAATGTTCTGTGGTAAATATACTCGCTGTACGGACTAACGTACGCAGTGTTTCCGGAAAACGCAAGAGCCGGACGATTTCAGAACATTTCTCCTCGACTTTTACTTCGTTTTCCTTGAGTTCTTCATTTttctgccctctagtggacacgcagaagtataaaccaggtCGCGCTGTTCGTCCAAGCTTCAGCACTTCGGCAGACCGCGTCTCGTTTCACGCTTTGTGTCCAGAGCTGCTTTTATCCcatttctgattttaaaaaaaaataaataactaccCCTGTCTGGTCCTCGTGTTCGAATGCGACATCGCTGCTAACTTCCGTGAAGTTGTGTGTCGGAGTATTTTGTATCAGGAAATTcttatttttccttttgttttggTCACTGGAAATAAACGTAACCATCGGCTCTGCATTTCCTGTTTAAAATCGAGGTTGATGGAGCGCTGGGTGATGATCAGAACTCCTGAAACgggtcttcttcttcttcttcttcttttcttcttcttctgcagtCTTGTGCACtgaatcttttttcttttctgttgtcCTTCACTCGGACGACAGTGAGatcagaggagtgtgtgttacgcCGCTTTAAAGGAAACGTCTCCTATTTATAATAGGGTAAATTTTTTCAGATGTAACGTGGATGCAGGAATGTGGTAGGGCTTTTTGCCTAAAATAATGGCACCTTTTTTGTTACGCTTTCCACCAGTTTTATGGTAACTGGTGTCCCAGTGTTGAATTGTatcgcctgtgtgtgtgtgtgtgtgtgtgtgtgtcttttattaAAAGATGCAGATCATCTCTTGactgtttaaagtttaaacttCGCTTTCTTCCATAATTTCTGGTCAAGATTAATATGAAGTACATATTAAAGCTCTAGATAGTTGACAGTGTTGGACTAGTGAGAACGCTTCTCGCTACAGTAGCGCTCAATGTGCAAAAGTAAGTGCCCCCATAGGCGCTGATTTCACATCACTGTTCCACTGGAATTTTGAAATGTTGAGTCTAAAGATAATTcaactaaaaattaaaaaatatatatattttttaaataaataagcagtaAACCAGGTGCTGtatccacaaaaaaaattaatacattctTACActtttactaaagatgaatttaGAGAAGACATTAAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324327 lncRNA upstream 138990 23135579 ~ 23135832 (+) True G273719
TU324290 lncRNA upstream 148219 23049812 ~ 23126603 (+) False lhx6
XR_004579810.1 lncRNA upstream 200884 23068937 ~ 23073938 (+) True LOC117599346
TU324237 lncRNA upstream 212477 23047921 ~ 23062345 (+) True G273644
TU324287 lncRNA upstream 236206 23037409 ~ 23038616 (+) True G273683
TU324506 lncRNA downstream 8150 23286000 ~ 23333549 (+) True G273880
TU324528 lncRNA downstream 118958 23396808 ~ 23398531 (+) True G273900
TU324813 lncRNA downstream 397793 23675643 ~ 23677227 (+) True G274161
TU324841 lncRNA downstream 574147 23851997 ~ 23852218 (+) True G274186
TU324847 lncRNA downstream 581974 23859824 ~ 23860703 (+) True G274192
XM_034312934.1 mRNA upstream 169 23244560 ~ 23274653 (+) True rc3h2
XM_034312933.1 mRNA upstream 169 23247556 ~ 23274653 (+) False rc3h2
XM_034312932.1 mRNA upstream 169 23250984 ~ 23274653 (+) False rc3h2
XM_026942477.2 mRNA upstream 42787 23220145 ~ 23232035 (+) True si:ch211-243g18.2
XM_026942850.2 mRNA upstream 105305 23163709 ~ 23169517 (+) True ndufa8
XM_034312519.1 mRNA downstream 3711 23281561 ~ 23386107 (+) True LOC113543986
XM_026942502.2 mRNA downstream 64946 23342796 ~ 23345808 (+) True LOC113543956
XM_026942654.2 mRNA downstream 288864 23566714 ~ 23618521 (+) True sh2d3ca
XM_026942655.2 mRNA downstream 288865 23566715 ~ 23615457 (+) False sh2d3ca
XM_026942657.2 mRNA downstream 299675 23577525 ~ 23615457 (+) False sh2d3ca
TU324492 other upstream 652 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 145502 23125367 ~ 23129320 (+) False lhx6
XR_003404475.2 other upstream 609252 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 899947 22369274 ~ 22374875 (+) False tmem230a
TU323423 other upstream 1795942 21476112 ~ 21478880 (+) True LOC113543995
TU324491 other downstream 43721 23321571 ~ 23360503 (+) False LOC113543986
TU324879 other downstream 825239 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 949531 24227381 ~ 24228678 (+) False LOC117599389
TU325389 other downstream 1252128 24529978 ~ 24587552 (+) False erbin

Expression Profile