RNA id: XM_034312932.1


Basic Information

Item Value
RNA id XM_034312932.1
length 4005
RNA type mRNA
GC content 0.57
exon number 19
gene id rc3h2
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23244560 ~ 23274653 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGTCACCGAGTCTCGCGCTGTGCGACAgaacttttttccctctctcggTGTACCGGAGAGAGGAGCATGCACGCGCTCAGCGCCGGTGCCGTGAAGTCTGAAGAGAGCTgcaggaggatgaggatgaggaggaagaggctCGAGCGGTTCATGCGCGAGCTCGTCTTGCAGAAAGAAATGCCGgtgtgtgtgagcagtcGAACCCGGGCGTCATGTGATCTCTGTAAGCCCGTGAACGCCCCCCGGAGGTGCCAGGATGCCCGTGCAGGCGGCGCAGTGGACGGAGTTCCTGTCCTGCCCCATCTGCCTGAACGAGTTCAACGCCGGCGGACACAAACCCATCAGCCTGGGCTGCTCACACACCGTGTGTAAGACGTGTCTCCACAAACTGCACCGTAAAGCCTGTCCCTTCGACCAGACCGCCATCAGCATCGACATCGAGCTCCTGCCCGTCAACCGCgccctgctgctgctggtggggGCGCAGgttccTGAAAGCCAGAGTGTGTGTCTGGGCAGCACTGAAGACACGCAGCATTATGACGTGTGCAGGACATGTGTGGAGGAGTTGGCGCTGTACCTCAAACCCATCACTGGGGGGAAAGGCGTGGTGTCTCCGAGTGCGAGCGCGCTCAGTCGGCCCATGCAGAGGAAGCTGGTGACTCTGGTGAACTGCCagctggtggaggaggagggCCGCGTGAGGGCACTACGAGCGGCTCGCTCTCTAGGAGAACGCACCATCACCGAGCTCATCCTGCAGCACCAGAACCCACAGCAGCTCTCCGCCAACCTGTGGGCCGCCGTCAGGGCGCGGGGGTGTCAGTTCCTCGGACCTgcgatgCAGGAGGACGCACTGAAGCTCGTACTGCTGGCTCTCGAGGACGGCTCGGCTCTCTCTCGCAAGGTTCTGGTGCTCTTCGTGGTCCAGAAGCTGGAAGCTCGGTTTCCTCAGGCCTCCAAGACGAGCATCGGACACGTGGTGCAGCTTCTGTACCGAGCTTCCTGCTTTAAGGTGACGAAGCGTGATGAAGACTCCTCGCTGATGCAGCTGAAGGAGGAGTTTCGTACGTACGAGGCTTTGAGGCGCGAACACGACGCACAGATCGTCCACATCGCCATGGAGGCGGGGCTCCGCATTTCTCCTGAGCAGTGGTCCTCTCTGCTGTACGGCGACCTCGTCCACAAATCACACATGCAGTCCATCATAGACAAGCTTCAGTCCCCAGAATCCTTTGCGAAGAGCGTGCAGGAGCTGACGATCGTCCTGCAGAGAACCGGAGACCCGGCCAACCTCAACATCCTCCGAGCTCCGCTAGAGCTCCTGGCTGGCATTGACCAGAACCtggatgcaGCCGTGCCCTCGTGGGAGGAGCTTGAGTCTGTGATGTTGGCGGTGAAGGTCGTGGTCCACGGGCTCGTCGAGTTCATCCAGAATTTCAGCAAAAAGAGTCACGAGACGTTTCAGtctcAGCCCAACAGTAAATACAAGACTAGCATGTGCCGAGACCTGCGGCAGCAAGGAACCTGCCCACGGGGTGTCAACTGCACCTTCGCCCACACCCAGGACGAGCTGGAAAaGTACCGAATGAGGAATAAGAAGGTCGGTTCAGGAACCAGACCGTCCCTTCTGTCCAAAACGGGTGCCGTTAAATCCTCAGCTGTAGACGCGTGTCCCGGCGAGCAGGAGGGCGGGGCCTCGGAGAGCTCCTCCCCCACTCGCCTCGTGCCCAGAGGAggagagcaggagcaggaggagctgaTGAAGGAGCTAGCTGACGGATTCCCGGCTACCAGCCAAGACCTGAAAACGGGTTCTCCTCCGAAGAGCCCAGCGTCAGGACCTCCTGCAGACGCCTCGCTGCTCCTCAAACCCGCTTCCGTACCGCAGAGAGGTCACCACGAGGTCACGTACTTTCCTGAACAGAGATCTGCGTACGATCTGCCGTCCTGCCCGTCTGGTAATTTTTTCCCTGCTCCTCTGTCGAACCCTCACAAACCCTACCTGCCTCGCTTCCCTCGCTCCAGCCCCGCCTCTGACTCCTCAGCCCCGCCTCCTCTGGCTCCTCCCTACCCTGACTCGCCCCTCCCGTCCCGTTTAGGCATGTCTCCGTATCCCCCCTCCCCCTCTTACCCACCCCTTCCTCACTCTCACCCCCACGGTCACGGCGTTTACGCTCCCGTCTACGACAGTCGGCGTCTCTGGAGGCCTCAGCTGTACCACAGACAGGACGGCCGGAGCAACTCGCTCCCTCTGGAGGTGCTGCACTCGTCCATCTATCATCCCCCTCTCCGGGAGCGCTTCAACTCGCTCGACAGCGCCTACTGCAGCGCCTCCAGCAGGAGAGCCGCGCTGCACCGGgaggcGTATGGCCGAGCCGCTCTGGGCTCTGAGGATTTCTACTCTCTCCGTCAGGAACAGTGGTCGCATCAGCACCACGGCTCGGGCCGAGCGGTGCAGCATTCCCCCGTCTTCACTGTGGATCTCTgccctgagtgtgtggagagcggtgtgtgtgtgagctgtaaaTGTGGAGGTGGAGATACTCCTCTCGGTCGTTACTCGCCGTGGTCGTGTGGCGCCGTCGGCCCGTTCGACTCGGAGCCTCTTTACTCTCACACCTGTTCCCAACACACGGACGGTGAGTGTACGGCTAAACACTGGCTGCACGTTTCTGAGCCGTACAGACGTGTGAAGGAAGAGGACCCCATCATCCCGTTCGGCGAGGGTCCCATCATCTCAAAGTGGGGCGCCATTTCACGCTCGTCTCGCACAGACCACCACACCACCGAACCCGTTCAGGCCACGGCGACGCACAGCCGCACAACCACCACCACGCTCATCAACttcaaagattacAGCTCTCAGGTCGGACAGGGCGAGTGCCGGTGGAGTCCGTGTGTGTTCGAGCCGACTCGCTCCGGGTTCCTAGagagtgagcagaaaCGCAGCTCCTTCAGCACCGCCGGGAAACGTGCAGCCGAGTTCCTGGCTCGCGACGGAGCAGAGAGCGGACCGGACCGGGACATCGAGCTGGAGCTGTGCGCTCTGCACATGGAGGACTCGGAACCACCGGGGATCCAGTCTGAGGCGTCTTTGGGGCCCCGGTGTGAAAATCACCTCTCCAGTGTGTTCAGTGACGGAGCAGGGAGCTCGCGGACGGCGCAGTCGTTATCTGAGCACATGGACGCTCATTTACTGAAGAAGATGGCATTTCGGAAGTCTCTCTCCCCCGGGGGCCTGAACGCTGGAGGTCTCACTGTGGGCGGTCTGGTGATGAAGACGGGTTCACTAAGACCTCCAGGAGACGCAGCCGGACCGAGCCCGGGACCTGAAATGATTCTGAACgggagctaaaaaaaaaaaaatttcagtgatTTAGAGTCTGAATGTTGGGTCAAAGCTCACGGCACTGATCCATGAGACCTTAGAGTctcgtttattattttcttaaagcACTTGCTTCCCCAAATTAATTCCAAACATCTTTCCAGTAATCAGATGTTTATGGAACATAAcccagttttttgttttgttttgttttttaaagaaaacctaTTGAAAAagattatgcatttttttttcaagcttcactcctttaattttttctttctctctatttttttttctgctttttaaaattttgcagCTTATGCAAATGTGTTTGTTCACAACCCCCATCTCAGGTCACCTAGCTGCCAATCAGAATCCACTTCTTAGCCAATCAGAGGCCTCCGATTACTCTTCCATCGGAaataacagtagtagtaataataataataataatgatgatgataatctGCATTTGTGATGAGCTTAATCTATTGCAGTTCCTGCCTGTAGGTTTCTATATTTCTACTaaatgtttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagaggggaaaaagccTGGTGCTCCGTAAATACTGTACATTGCATATGTCATGGTGCAGTACTAATGACTCAGTTGACATGCATGAAACGCGagtgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324327 lncRNA upstream 115152 23135579 ~ 23135832 (+) True G273719
TU324290 lncRNA upstream 124381 23049812 ~ 23126603 (+) False lhx6
XR_004579810.1 lncRNA upstream 177046 23068937 ~ 23073938 (+) True LOC117599346
TU324237 lncRNA upstream 188639 23047921 ~ 23062345 (+) True G273644
TU324287 lncRNA upstream 212368 23037409 ~ 23038616 (+) True G273683
TU324487 lncRNA downstream 169 23274822 ~ 23277850 (+) False G273865
TU324506 lncRNA downstream 11347 23286000 ~ 23333549 (+) True G273880
TU324528 lncRNA downstream 122155 23396808 ~ 23398531 (+) True G273900
TU324813 lncRNA downstream 400990 23675643 ~ 23677227 (+) True G274161
TU324841 lncRNA downstream 577344 23851997 ~ 23852218 (+) True G274186
XM_026942477.2 mRNA upstream 18949 23220145 ~ 23232035 (+) True si:ch211-243g18.2
XM_026942850.2 mRNA upstream 81467 23163709 ~ 23169517 (+) True ndufa8
XM_026942809.2 mRNA upstream 105417 23125352 ~ 23145567 (+) False lhx6
XM_034312519.1 mRNA downstream 6908 23281561 ~ 23386107 (+) True LOC113543986
XM_026942502.2 mRNA downstream 68143 23342796 ~ 23345808 (+) True LOC113543956
XM_026942654.2 mRNA downstream 292061 23566714 ~ 23618521 (+) True sh2d3ca
XM_026942655.2 mRNA downstream 292062 23566715 ~ 23615457 (+) False sh2d3ca
XM_026942657.2 mRNA downstream 302872 23577525 ~ 23615457 (+) False sh2d3ca
TU324289 other upstream 121664 23125367 ~ 23129320 (+) False lhx6
XR_003404475.2 other upstream 585414 22622428 ~ 22665570 (+) True lrrtm4l1
TU323909 other upstream 876109 22369274 ~ 22374875 (+) False tmem230a
TU323423 other upstream 1772104 21476112 ~ 21478880 (+) True LOC113543995
TU322810 other upstream 2708030 20540325 ~ 20542954 (+) True G272408
TU324491 other downstream 46918 23321571 ~ 23360503 (+) False LOC113543986
TU324879 other downstream 828436 24103089 ~ 24104595 (+) False hsdl2
TU325154 other downstream 952728 24227381 ~ 24228678 (+) False LOC117599389
TU325389 other downstream 1255325 24529978 ~ 24587552 (+) False erbin

Expression Profile