RNA id: TU325003


Basic Information

Item Value
RNA id TU325003
length 301
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G274321
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23839988 ~ 23840458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAAAGAGCTGTCTCAAAGAGCTGTCTCAAAGAGCTGTCTCAAAGAGCTGAATTAAAGAAAGAGGCGACTCAAAGAACCTACTTAAAAAGCTGACTGAAAGATCTGAATCAGAGTCAATTCAGAGATCACTAAAATAGGTCACTCAAAGTCGGGACTCAAAGAGATGACGTAACGAGTTGACTCAAAGAGCTGACTCAAAGATCTGATTTGAAAAGATGAATCTGTGCCAACTCAAAGAAATCACTAAAAGAGCTGCCTCCAAGGGCTAACTCAAATAGATGAATCAAGGAGCTGAATCA

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325040 lncRNA downstream 10229 23824093 ~ 23829759 (-) True G274355
TU325021 lncRNA downstream 49844 23789458 ~ 23790144 (-) True G274339
XR_003404471.2 lncRNA downstream 59218 23778853 ~ 23780770 (-) True LOC113544044
XR_003404470.2 lncRNA downstream 59223 23778853 ~ 23780765 (-) False LOC113544044
TU324960 lncRNA downstream 103013 23720984 ~ 23736975 (-) True G274290
TU325046 lncRNA upstream 7902 23848360 ~ 23848564 (-) True G274361
TU325031 lncRNA upstream 18882 23859340 ~ 23860952 (-) False nrarpa
TU325055 lncRNA upstream 27784 23868242 ~ 23868457 (-) True G274370
TU325075 lncRNA upstream 98738 23939196 ~ 23942218 (-) True G274383
TU325072 lncRNA upstream 102954 23943412 ~ 24020906 (-) True G274380
XM_026942636.2 mRNA downstream 94455 23723727 ~ 23745533 (-) True dbh
XM_034312509.1 mRNA downstream 332490 23394533 ~ 23507498 (-) False strbp
XM_034312286.1 mRNA upstream 18847 23859305 ~ 23863260 (-) False nrarpa
XM_034312285.1 mRNA upstream 18847 23859305 ~ 23863260 (-) True nrarpa
XM_034312837.1 mRNA upstream 33235 23873693 ~ 23935370 (-) True exd3
XM_034312890.1 mRNA upstream 103917 23944375 ~ 23956050 (-) True ak3
XM_034312723.1 mRNA upstream 200573 24041031 ~ 24095321 (-) True ptbp3
TU325027 other downstream 37704 23798359 ~ 23802284 (-) True G274342
XR_004579778.1 other downstream 2632818 21189969 ~ 21207170 (-) False LOC113544130
TU322970 other downstream 3759077 20079415 ~ 20080911 (-) True G272551
trnad-guc_8 other downstream 3814694 20025223 ~ 20025294 (-) True trnad-guc_8
TU321880 other downstream 5259566 18579749 ~ 18580422 (-) False tssk6
TU325032 other upstream 21540 23861998 ~ 23863268 (-) False nrarpa
TU325209 other upstream 411145 24251603 ~ 24253306 (-) False inip
TU325248 other upstream 457023 24297481 ~ 24301004 (-) False LOC113544170

Expression Profile