RNA id: TU325129


Basic Information

Item Value
RNA id TU325129
length 412
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G274431
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24124736 ~ 24125213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGTTTCACTGTCTTCCGGCTTTCTTTCTTCAGCAGCAGctgcagcttcagcttcaggttCAGCCTCAGGTTCAGCGTCAACTacagcttcagcttcaggttCAGCTTCAGGTTCAGCCTCCACTACagcttcaggttcaggttcagcttcagcttcagcttcagcttcaacCTCAGCTTCAGGTTCAGCGTCAGCTTCAGCCTCCACTACAGCTTCAGGTTCAGCTTCAACCTCAGGTTCAGCGTCAGCTTCAGCCTCCACTACAGCTTCAGGTTCAGCATCAACtacagcttcagcttcagcttcaggttcaggttcagctTCAGCCTCCACTACAGCTTCAGGTTCagcttcaggttcaggttcaggttcagctTCAGCCTCCACTACAGCTTCAGGTTCAGCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324954 lncRNA upstream 13998 24107648 ~ 24110738 (+) True G274289
TU324897 lncRNA upstream 178229 23945616 ~ 23946507 (+) True G274239
TU324880 lncRNA upstream 184625 23938033 ~ 23940111 (+) False cdc37l1
TU324848 lncRNA upstream 255539 23868854 ~ 23869197 (+) True G274193
TU324847 lncRNA upstream 264033 23859824 ~ 23860703 (+) True G274192
TU325153 lncRNA downstream 100941 24226154 ~ 24226807 (+) False LOC117599389
TU325166 lncRNA downstream 132694 24257907 ~ 24261576 (+) False G274457
TU325164 lncRNA downstream 134496 24259709 ~ 24261542 (+) True G274457
TU325323 lncRNA downstream 277810 24403023 ~ 24491201 (+) True G274583
TU325373 lncRNA downstream 366202 24491415 ~ 24491856 (+) True G274624
XM_026942828.2 mRNA upstream 11883 24103073 ~ 24112853 (+) True hsdl2
XM_034312839.1 mRNA upstream 113686 23971438 ~ 24011050 (+) True ugcg
XM_034312838.1 mRNA upstream 184604 23937978 ~ 23940132 (+) True cdc37l1
XM_034312903.1 mRNA upstream 279341 23835167 ~ 23845395 (+) True ambp
XM_026942804.2 mRNA upstream 293211 23815676 ~ 23831525 (+) True ptgdsa
XM_034312840.1 mRNA downstream 101586 24226799 ~ 24232819 (+) True LOC117599389
XM_026942694.2 mRNA downstream 108547 24233760 ~ 24252068 (+) True LOC113544070
XM_034312594.1 mRNA downstream 108547 24233760 ~ 24246783 (+) False LOC113544070
XM_034312929.1 mRNA downstream 150869 24276082 ~ 24296725 (+) True cops4
XM_034312916.1 mRNA downstream 184818 24310031 ~ 24359123 (+) False cwc27
TU324879 other upstream 20141 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 764233 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 850566 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 995416 23125367 ~ 23129320 (+) False lhx6
XR_003404475.2 other upstream 1459166 22622428 ~ 22665570 (+) True lrrtm4l1
TU325154 other downstream 102168 24227381 ~ 24228678 (+) False LOC117599389
TU325389 other downstream 404765 24529978 ~ 24587552 (+) False erbin

Expression Profile