RNA id: XM_034312840.1


Basic Information

Item Value
RNA id XM_034312840.1
length 1985
RNA type mRNA
GC content 0.54
exon number 17
gene id LOC117599389
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24226154 ~ 24232819 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGACAGGAGGAATCCAATGGCCAGTCTCTGGcAGGAGAAAGTGGGGAGATCGTGATGAGTGCCGACGCTGAAGCTGAGGCTGAAGCCTTTAATGATTTCCTGACCGTCCTCCTGGAGGAGATAAGCGACGAGATCAACCTGCCTCTGGgGATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCTGAACGTCCTCCTGGATCAGTCAGGGGAAATGATCGACCTGCCTCTGGgGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAGCCAGCTCCAGAACGTCCTCCTGGATCAGGCAGGGGAAACTTCTGGCCACTCTCTGGGGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAGCCAGCTCCAGAACGTCCTCCTGGATCAGGCAGGGGAAACTTCTGGCCAGTCTCTGgGGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAACGTCCTCCTGGATCAGGCAGGGGAAACTTCTGGCCAGTCTCTGGGGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAGCCAGCTCCAGAACGTCCTCCTGGATCAGTCAGGGGAAACTTCTGGCCAGTCTCTGGgGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAGCCAGCTCCAGAAAGTCCTCCTGGATCAGGCAGGGGAAACATCTGGCCAGTCTCTGGGGATGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCATCCAGCTCCAGAATGTCCTCCTGGATCAGGCAGGGGAAACATCTGGCCAGTCTCTGGagatGCTGAAGGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAGCCAGCTCCAGAACGTTCTCCTAGTTCAGGCAGGGGAAACTTCTGGCCAGTCTCTGGcAGGAGAAAGTGGGGAGATCGTGATGAGTGCCGACGCTGAAGCTGAGGCTGAAGCCTTTAATGATTTCCTGACCGTCCTCCTGGAGGAGATAAGCGACGAGATCAACCTGCCTCTGGgagacATTGAGGCTGAAGCTGAAGGTGAAACTAAAGCTGAAGCTGAAGGTCAAGCTGAAGTTGAGGCTGAAGTTGAGGCAGAAGGTGAAGCTGAAGTTGAGGCAGAAGATGAAGTTGAAGCTGAAATTGAGGCTGAAAGTGAAGCTGAAGGTGAAACtaaagctgaagctgaagttgAGGCTGAAGATAAAGGTGAAGCTGAAGGAGTTGTTGAAGAAGGAAAGCTGGACGACACTAAAACAGAGAACAGCACATCTCTGGAGAGCAATAATACAGAGAAGCCTGAAAACACCGGGAatggaaatgagaaaaagaaaaggagcagGAGAGGAACACGAGGCAAAGGAAGGAAGATCAATTACAGAAAGTTCCAGGACAATAAAGcagGACGATCTGCAGCTGAGGCCGTAGAAAGACCAGCAGAAGATGCAGAAACAGAGAACAGCACACCTCTGGCAGACAAACCCATGGTGAAGGCGGATGAAGAATCTGAGCCTAAAGAGGAAATCCAACTCCCTGAGACGGAGACCGTTAACGAGCAGCTCCTGAATGAAGTAAAGGCAAAGAAGAAGGTCAGGAGAGGAACACgaggaagagggagaaaaaTCAACTACAAGAAAGTTGAGGACAAAGAAGCTGAACAGAATGGAGGGAGGAAAGAGCTGACTGACGCCAAAGCATCAAGAGACCAGCGTGAAcgtcagacagaaagaaagccgcagacacacacacgtgtgtggaCACGCCGTGACCGAGCCTGTGAGTCAGGGTGGAGAGGACCTGCTCACTGCGaccagagagacaggagagtcCCGAGAAGATCAGCTCAAGAGACGCCATCACATGCTGGAGCCTGatcaattaaacacacacacacacacacaccaagcccCCATCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325129 lncRNA upstream 101586 24124736 ~ 24125213 (+) True G274431
TU324954 lncRNA upstream 116061 24107648 ~ 24110738 (+) True G274289
TU324897 lncRNA upstream 280292 23945616 ~ 23946507 (+) True G274239
TU324880 lncRNA upstream 286688 23938033 ~ 23940111 (+) False cdc37l1
TU324848 lncRNA upstream 357602 23868854 ~ 23869197 (+) True G274193
TU325166 lncRNA downstream 25088 24257907 ~ 24261576 (+) False G274457
TU325164 lncRNA downstream 26890 24259709 ~ 24261542 (+) True G274457
TU325323 lncRNA downstream 170204 24403023 ~ 24491201 (+) True G274583
TU325373 lncRNA downstream 258596 24491415 ~ 24491856 (+) True G274624
TU325331 lncRNA downstream 263091 24495910 ~ 24498527 (+) False trappc13
XM_026942828.2 mRNA upstream 113946 24103073 ~ 24112853 (+) True hsdl2
XM_034312839.1 mRNA upstream 215749 23971438 ~ 24011050 (+) True ugcg
XM_034312838.1 mRNA upstream 286667 23937978 ~ 23940132 (+) True cdc37l1
XM_034312903.1 mRNA upstream 381404 23835167 ~ 23845395 (+) True ambp
XM_026942804.2 mRNA upstream 395274 23815676 ~ 23831525 (+) True ptgdsa
XM_026942694.2 mRNA downstream 941 24233760 ~ 24252068 (+) True LOC113544070
XM_034312594.1 mRNA downstream 941 24233760 ~ 24246783 (+) False LOC113544070
XM_034312929.1 mRNA downstream 43263 24276082 ~ 24296725 (+) True cops4
XM_034312916.1 mRNA downstream 77212 24310031 ~ 24359123 (+) False cwc27
XM_034312917.1 mRNA downstream 77212 24310031 ~ 24359123 (+) True cwc27
TU324879 other upstream 122204 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 866296 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 952629 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 1097479 23125367 ~ 23129320 (+) False lhx6
XR_003404475.2 other upstream 1561229 22622428 ~ 22665570 (+) True lrrtm4l1
TU325389 other downstream 297159 24529978 ~ 24587552 (+) False erbin

Expression Profile