RNA id: TU325323


Basic Information

Item Value
RNA id TU325323
length 200
lncRNA type read_through
GC content 0.35
exon number 2
gene id G274583
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24403023 ~ 24491201 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcacctttaaacacaaacactcacctttaaacactctcctttaacacaaacactctcctttaaacacaaacactctcctttaaacacaaacactctcctttaaacacaaacactctcctttaaacacaaacactctcctttaaacactctcctttaaacacaaacactcacctttaaacacaaacactcacctttaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325166 lncRNA upstream 141447 24257907 ~ 24261576 (+) False G274457
TU325164 lncRNA upstream 141481 24259709 ~ 24261542 (+) True G274457
TU325153 lncRNA upstream 176216 24226154 ~ 24226807 (+) False LOC117599389
TU325129 lncRNA upstream 277810 24124736 ~ 24125213 (+) True G274431
TU324954 lncRNA upstream 292285 24107648 ~ 24110738 (+) True G274289
TU325373 lncRNA downstream 214 24491415 ~ 24491856 (+) True G274624
TU325331 lncRNA downstream 4709 24495910 ~ 24498527 (+) False trappc13
TU325332 lncRNA downstream 4709 24495910 ~ 24498642 (+) False trappc13
TU325393 lncRNA downstream 45929 24537130 ~ 24537736 (+) True G274639
TU325400 lncRNA downstream 91780 24582981 ~ 24583278 (+) True G274646
XM_034312916.1 mRNA upstream 43900 24310031 ~ 24359123 (+) False cwc27
XM_034312917.1 mRNA upstream 43900 24310031 ~ 24359123 (+) True cwc27
XM_034312929.1 mRNA upstream 106298 24276082 ~ 24296725 (+) True cops4
XM_026942694.2 mRNA upstream 150955 24233760 ~ 24252068 (+) True LOC113544070
XM_034312594.1 mRNA upstream 156240 24233760 ~ 24246783 (+) False LOC113544070
XM_034312566.1 mRNA downstream 12662 24503863 ~ 24525223 (+) True nln
XM_034312565.1 mRNA downstream 20281 24511482 ~ 24525223 (+) False nln
XM_034312379.1 mRNA downstream 94316 24585517 ~ 24639642 (+) True erbin
XM_034312313.1 mRNA downstream 158050 24649251 ~ 24658701 (+) True zfand5b
XM_034312314.1 mRNA downstream 163446 24654647 ~ 24658701 (+) False zfand5b
TU325154 other upstream 174345 24227381 ~ 24228678 (+) False LOC117599389
TU324879 other upstream 298428 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 1042520 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 1128853 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 1273703 23125367 ~ 23129320 (+) False lhx6
TU325389 other downstream 38777 24529978 ~ 24587552 (+) False erbin

Expression Profile