RNA id: TU325332


Basic Information

Item Value
RNA id TU325332
length 1466
lncRNA type sense_over
GC content 0.43
exon number 3
gene id trappc13
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24480599 ~ 24498642 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAGATGTGTAACACTCGGTCAGTGCACTGGTGCGGAGTTTCAGGCAGGCAGCTGGGAAAACTGGGTCCGAGTGCATCTCTGTCCATCCCACTGCAGCTCCTCTCCTCTGTACAGGGACTACAGagtATATCAGGCCTGAGGCTGACGGACACCTTCCTGAAGCGGACGTACGAGTACGACGACattgcacaggtgtgtgtggtgtgtcctTACCTGAGCCCTGAGACCTGAGGCTCCTCCCACTTCCTGTATCGGTAACCTGCACCTCCATGGACCAACCGCATCGCCATTTTTACACTATCAGCTGACCTGCTTCTTTTAAAGTGTGTGCTTTTAAAGCCTTATTCTGATtttaagtgtgtgaatgttaaTAAAAGAGCGAACTCAGAGCGAAGAGCAGACTTCTGTACGGAGAAATAACTGATATCCACAAACAGCTCATCAAACGTTTAGGGACACGGAGCCTTTATCACTTCTTACATTTCTGAGTAACGCGTGAGTTTTAGTGACTGTAAACACAACACGGGAACACCGTCACGCCCAGTCGAGTCAGATCAACAGCTCTGTCCACAAACCTCTGTGACGTTCtccgagagagggagagagggagagagagagagaaagagggagagagagagagagagacagagagagagagagagagagagagagagagagggagagagagggagagggagggagagggagggagagagagagactgcagaAAGATGAGGCGTTTTTAATTATTGTCAGAACATTCACACGTGATTTTGTTTCCATCAGAATAAACCTTGCTAGCCTTTAAAGCAGCTGTTAGTAATGTTTACAGCCCCCTGCTGCCTGTGAGGTGAACTGCAGAGCCCCACCCCCTGTGTTAAACCGCTGTATCCTATAAGAacgagtgggcggggcttaatcCATTTCAGGGCCGGGGAAAGATATAAACAGAAGTCTGAAATGTAGAAACGATCCTCTGCACGGTGATGCTGGAAATCAAAGTTTTGGAAAGTTCTTGAAATTCTGATATTTCTTCCAGGtctagaaataattttaaacattacacaccGCACCTTTAATACAGGATATTATTGCAAAATGACAAGatgattattaatttaaagcattCTGAAACGCTGCGTGTTCCCAAACTTTTGATGAGCAGCACATTTCTGTGTTAaagcataaatacataaaacttCCACAAGGAAAATGAGCttctataaatacatacagaaCATACCACAGGATTactgattattaattaatatttaatatttaatcactCTTTCAGTCGTTTGGTTCTTGCTGaagaaacacacaataaattcAACAGCGATTTCACGTCACATTTATTCACCTGtcatttgatctttttttttatatatatttatttatatatatagagagagagctctGTGTTTACACGCATGTTGTGTTTAAAGAGGAAATCACACACTCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325373 lncRNA upstream 4054 24491415 ~ 24491856 (+) True G274624
TU325323 lncRNA upstream 4709 24403023 ~ 24491201 (+) True G274583
TU325166 lncRNA upstream 234334 24257907 ~ 24261576 (+) False G274457
TU325164 lncRNA upstream 234368 24259709 ~ 24261542 (+) True G274457
TU325153 lncRNA upstream 269103 24226154 ~ 24226807 (+) False LOC117599389
TU325393 lncRNA downstream 38488 24537130 ~ 24537736 (+) True G274639
TU325400 lncRNA downstream 84339 24582981 ~ 24583278 (+) True G274646
TU325402 lncRNA downstream 101220 24599862 ~ 24658695 (+) False zfand5b
TU325407 lncRNA downstream 153108 24651750 ~ 24652197 (+) True G274653
TU325417 lncRNA downstream 182821 24681463 ~ 24682939 (+) True G274662
XM_034312918.1 mRNA upstream 256 24480599 ~ 24495654 (+) False trappc13
XM_034312584.1 mRNA upstream 30810 24457036 ~ 24465100 (+) True ppwd1
XM_034312916.1 mRNA upstream 136787 24310031 ~ 24359123 (+) False cwc27
XM_034312917.1 mRNA upstream 136787 24310031 ~ 24359123 (+) True cwc27
XM_034312929.1 mRNA upstream 199185 24276082 ~ 24296725 (+) True cops4
XM_034312566.1 mRNA downstream 5221 24503863 ~ 24525223 (+) True nln
XM_034312565.1 mRNA downstream 12840 24511482 ~ 24525223 (+) False nln
XM_034312379.1 mRNA downstream 86875 24585517 ~ 24639642 (+) True erbin
XM_034312313.1 mRNA downstream 150609 24649251 ~ 24658701 (+) True zfand5b
XM_034312314.1 mRNA downstream 156005 24654647 ~ 24658701 (+) False zfand5b
TU325154 other upstream 267232 24227381 ~ 24228678 (+) False LOC117599389
TU324879 other upstream 391315 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 1135407 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 1221740 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 1366590 23125367 ~ 23129320 (+) False lhx6
TU325389 other downstream 31336 24529978 ~ 24587552 (+) False erbin

Expression Profile