RNA id: XM_034312918.1


Basic Information

Item Value
RNA id XM_034312918.1
length 1163
RNA type mRNA
GC content 0.52
exon number 10
gene id trappc13
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24480599 ~ 24498642 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGCGGTTTGCTCCTGTGTGCTTGCCGTAGTCAGCTGATCAtgcaggtcaaaggtcaactgCTAGACAAAATGGACGTCAATCAGGCTAAACAGGAGCATCTCCTTGCACTAaaggTGATGCGTCTGACGAAACCCACGCTGTTCACCAACATGCCTGTGACGTGTGAAGACCAAGACCTTCCAGgtgatcTGTTCGGGCGGCTCATGAGGGAGGACCCGTCCACCATAAAGGGGGCGGAGCCTCTGATGCTCGGGGAGATGCTCACGCTGCCGCAGAATTTTggAAATATTTTCCTTGGCGAGACTTTCTCCAGTTACATCAGCGTGCACAACGACAGCAGTCAAGTGGTGAAGGACATTCTAGTGAAGgccgACCTCCAGACCAGCTCTCAGAGATTAAACCTCTCTGCGTCTAACTCTGCCGTGGCCGAGCTCAAACCCGAGTGCTGCATCGATGACGTCATCCACCACGAGGTCAAAGAGATCGGGACACACATCCTGGTGTGTGCCGTCAGCTACACCACTCAGACCGGAGACAAACTGTACTTTAGgaagttttttaaatttcagGTGCTCAAGCCTCTGGATGTGAAAACCAAGTTCTACAACGCAGAGACAGACGAGGTTTTCCTGGAGGCTCAGATCCAGAACATCACCACCTCGTCCATGTTCATGGAAAAAGTGTCTCTGGAACCTTCCATGATGTACAACGTCACCGAACTGAACACAGTGTGCTCAGGAGAGGAGCGCGAGTCGACGTTTGGGAAGATGTCGTACCTGCAGCCCATGGACACGCGGCAGTACCTGTACTGTCTGAAACCCAAGCCGGAGTTCGCAGAGAAGGCAGGAGTCATTAAAGGCGTCACCGTCATCGGCAAACTGGACATCGTGTGGAAGACCAACCTGGGGGAGAGAGGACGCTTACAGACCAGCCAGCTGCAGAGAATGGCTCCGGGATACGGAGATGTTCGGCTCTCGCTGGAGCTCGTTCCAGACACGGTGAACATCGAGGAGCCGTTCGACATCACCTGTAAAATCACAAACTGCAGGTACAAGCACAGGAGTCCTCTCTGtaaaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatacatGCCATTATATAAACTTCTAAAAATATTTCGAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325166 lncRNA upstream 219023 24257907 ~ 24261576 (+) False G274457
TU325164 lncRNA upstream 219057 24259709 ~ 24261542 (+) True G274457
TU325153 lncRNA upstream 253792 24226154 ~ 24226807 (+) False LOC117599389
TU325129 lncRNA upstream 355386 24124736 ~ 24125213 (+) True G274431
TU324954 lncRNA upstream 369861 24107648 ~ 24110738 (+) True G274289
TU325331 lncRNA downstream 256 24495910 ~ 24498527 (+) False trappc13
TU325332 lncRNA downstream 256 24495910 ~ 24498642 (+) False trappc13
TU325393 lncRNA downstream 41476 24537130 ~ 24537736 (+) True G274639
TU325400 lncRNA downstream 87327 24582981 ~ 24583278 (+) True G274646
TU325402 lncRNA downstream 104208 24599862 ~ 24658695 (+) False zfand5b
XM_034312584.1 mRNA upstream 15499 24457036 ~ 24465100 (+) True ppwd1
XM_034312916.1 mRNA upstream 121476 24310031 ~ 24359123 (+) False cwc27
XM_034312917.1 mRNA upstream 121476 24310031 ~ 24359123 (+) True cwc27
XM_034312929.1 mRNA upstream 183874 24276082 ~ 24296725 (+) True cops4
XM_034312594.1 mRNA upstream 233816 24233760 ~ 24246783 (+) False LOC113544070
XM_034312566.1 mRNA downstream 8209 24503863 ~ 24525223 (+) True nln
XM_034312565.1 mRNA downstream 15828 24511482 ~ 24525223 (+) False nln
XM_034312379.1 mRNA downstream 89863 24585517 ~ 24639642 (+) True erbin
XM_034312313.1 mRNA downstream 153597 24649251 ~ 24658701 (+) True zfand5b
XM_034312314.1 mRNA downstream 158993 24654647 ~ 24658701 (+) False zfand5b
TU325154 other upstream 251921 24227381 ~ 24228678 (+) False LOC117599389
TU324879 other upstream 376004 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 1120096 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 1206429 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 1351279 23125367 ~ 23129320 (+) False lhx6
TU325389 other downstream 34324 24529978 ~ 24587552 (+) False erbin

Expression Profile