RNA id: TU325389


Basic Information

Item Value
RNA id TU325389
length 1072
RNA type TUCP
GC content 0.43
exon number 4
gene id erbin
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24529978 ~ 24639642 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTCTGctgctctctcttctctctgcactctatattatatattatatatatatgtattatatatattttatattttatagattaAATAATGTTTGAGATTTGATCGGTGAGAATCTCAGAGCGCGGATTGTACCGGGAACAcggttattttttatttctttattgttgtttttgtgttttctgctttttaaatttcagtcattgtgaaaaaaaaactgggatTTTATCTAAATTAAAAGGATTAgcatttatccttttttaaaaaataataataatccggAGTGTTTGTTCTGGAATCGCAGGACAGATCAGAAACTCTCTTTATGTTGTGAAGAAAACTTGTCCGaatccaacttttttttttctgaggtgaAAAAAATGCTAAGCTAATTCGTATTTAGCGATTTAGCGATAGCTAGCTTAGATTAGCATAGCTTAGCATAGCTTAGCATAGCATGCTAACATCCCTTCTGAGGGAAAGCGCTCGGACTCGGCTACTTTCTCTCACAGCGATGCTTCTGACCTGACtggatttaaacatttttaaaacaaaattcctcttaaaaaggaaataaaaggcGAAGAACAAAAAGGTGCCCTGGCTGCTGATTTATTCACTCTTGTTGGATGTCTCTTCATCTGCTGAGCGAGAGCCTGAGACGTGGATCATAAATGAGAAGtgTCTGAGGTGGtggagcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgagtgagtgagtgtgaggaTGAGCTCTAAGCGCAGTCTGTTGGTGCGGCTGGTGCCGTGCCGGTGTTTGCGCGGTGAGGAGGAGACGGTCACCTCTCTGGACTACAGCCACTGCAGCCTGGAGCAGGTTCCCAAAGAGATCTTCAGCTTCGAGAAGACCCTGGAGGAGCTCTACCTGGATGCCAACCAGATCGAGGAGCTCCCCAAGCAACTGTTTAACTGTCAGCTGCTGCACCGGCTGAGTCTGCCCGACAACGACCTGAGCGTCCTGCCCCCGGCCATCGCTAACCTCGTCAACCTCCGAGGCTTCGATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325332 lncRNA upstream 31336 24495910 ~ 24498642 (+) False trappc13
TU325331 lncRNA upstream 31451 24495910 ~ 24498527 (+) False trappc13
TU325373 lncRNA upstream 38122 24491415 ~ 24491856 (+) True G274624
TU325323 lncRNA upstream 38777 24403023 ~ 24491201 (+) True G274583
TU325166 lncRNA upstream 268402 24257907 ~ 24261576 (+) False G274457
TU325402 lncRNA downstream 12310 24599862 ~ 24658695 (+) False zfand5b
TU325407 lncRNA downstream 64198 24651750 ~ 24652197 (+) True G274653
TU325417 lncRNA downstream 93911 24681463 ~ 24682939 (+) True G274662
TU325454 lncRNA downstream 167630 24755182 ~ 24755384 (+) True G274696
TU325470 lncRNA downstream 191509 24779061 ~ 24779322 (+) True G274710
XM_034312566.1 mRNA upstream 4755 24503863 ~ 24525223 (+) True nln
XM_034312565.1 mRNA upstream 4755 24511482 ~ 24525223 (+) False nln
XM_034312919.1 mRNA upstream 32736 24480599 ~ 24497242 (+) True trappc13
XM_034312920.1 mRNA upstream 32736 24480599 ~ 24497242 (+) False trappc13
XM_034312918.1 mRNA upstream 34324 24480599 ~ 24495654 (+) False trappc13
XM_034312313.1 mRNA downstream 61699 24649251 ~ 24658701 (+) True zfand5b
XM_034312314.1 mRNA downstream 67095 24654647 ~ 24658701 (+) False zfand5b
XM_026911826.2 mRNA downstream 131177 24718729 ~ 24733547 (+) True apba1b
TU325154 other upstream 301300 24227381 ~ 24228678 (+) False LOC117599389
TU324879 other upstream 425383 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 1169475 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 1255808 23265453 ~ 23274170 (+) False rc3h2
TU324289 other upstream 1400658 23125367 ~ 23129320 (+) False lhx6

Expression Profile