RNA id: TU325402


Basic Information

Item Value
RNA id TU325402
length 222
lncRNA type read_through
GC content 0.38
exon number 2
gene id zfand5b
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24599862 ~ 24658701 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgcacaTTGGCGTTTCTGTACGAGACTCGTTCAGTTACGCAGTAAAACTGTCGTCTGTCGTTTCAGTTCTGCGGTTTGTACAAGCGAACCccttattatatttattatatgtattgCGCATCTAATCTTGTTACCCAACATTACAAAATTGtatcatgtaaataaaattatgtacAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325400 lncRNA upstream 16584 24582981 ~ 24583278 (+) True G274646
TU325393 lncRNA upstream 62126 24537130 ~ 24537736 (+) True G274639
TU325332 lncRNA upstream 101220 24495910 ~ 24498642 (+) False trappc13
TU325331 lncRNA upstream 101335 24495910 ~ 24498527 (+) False trappc13
TU325373 lncRNA upstream 108006 24491415 ~ 24491856 (+) True G274624
TU325417 lncRNA downstream 22768 24681463 ~ 24682939 (+) True G274662
TU325454 lncRNA downstream 96487 24755182 ~ 24755384 (+) True G274696
TU325470 lncRNA downstream 120366 24779061 ~ 24779322 (+) True G274710
TU325474 lncRNA downstream 124201 24782896 ~ 24783522 (+) True G274714
TU325464 lncRNA downstream 126104 24784799 ~ 24795110 (+) True G274704
XM_034312566.1 mRNA upstream 74639 24503863 ~ 24525223 (+) True nln
XM_034312565.1 mRNA upstream 74639 24511482 ~ 24525223 (+) False nln
XM_034312919.1 mRNA upstream 102620 24480599 ~ 24497242 (+) True trappc13
XM_026911826.2 mRNA downstream 60034 24718729 ~ 24733547 (+) True apba1b
TU325389 other upstream 12310 24529978 ~ 24587552 (+) False erbin
TU325154 other upstream 371184 24227381 ~ 24228678 (+) False LOC117599389
TU324879 other upstream 495267 24103089 ~ 24104595 (+) False hsdl2
TU324491 other upstream 1239359 23321571 ~ 23360503 (+) False LOC113543986
TU324492 other upstream 1325692 23265453 ~ 23274170 (+) False rc3h2

Expression Profile